Merge pull request #108 from FAIRDataPipeline/dev #348
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| name: Python FAIR Data Pipeline | |
| on: [push, workflow_dispatch] | |
| jobs: | |
| test: | |
| name: Test ${{ matrix.os }} (Python ${{ matrix.python }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [windows-latest,ubuntu-latest,macos-latest] | |
| python: ["3.9", "3.10", "3.x"] | |
| defaults: | |
| run: | |
| shell: bash | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Checkout pySimpleModel | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: FAIRDataPipeline/pySimpleModel | |
| path: pySimpleModel | |
| - name: Move pySimpleModel | |
| run: mv pySimpleModel ../pySimpleModel | |
| - name: Run Tests on Windows | |
| run: | | |
| poetry install | |
| pip3 install fair-cli | |
| fair registry install | |
| pip3 install ../pySimpleModel | |
| fair init --ci | |
| fair registry start | |
| fair pull --local data_pipeline_api/ext/SEIRSconfig.yaml | |
| fair run --local data_pipeline_api/ext/SEIRSconfig.yaml | |
| poetry run pytest --cov=data_pipeline_api --cov-report=xml --cov-report=term -s tests/ | |
| if: matrix.os == 'windows-latest' | |
| - name: Run Tests on other OS | |
| if: matrix.os != 'windows-latest' | |
| run: | | |
| poetry install | |
| source .venv/bin/activate | |
| pip install fair-cli | |
| fair registry install | |
| pip install ../pySimpleModel | |
| fair init --ci | |
| fair registry start | |
| fair pull --local data_pipeline_api/ext/SEIRSconfig.yaml | |
| fair run --local data_pipeline_api/ext/SEIRSconfig.yaml | |
| python3 -m poetry run pytest --cov=data_pipeline_api --cov-report=xml --cov-report=term -s tests/ | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| fail_ci_if_error: false | |
| verbose: true | |
| if: matrix.python == '3.9' && matrix.os == 'ubuntu-latest' |