addressing #1402 (#1537)

Co-authored by @cpavloud
EnvironmentOntology · Sep 12, 2024 · 1bc7298 · 1bc7298
1 parent 3a0dcab
commit 1bc7298
Showing 1 changed file with 51 additions and 1 deletion.
diff --git a/src/envo/envo-edit.owl b/src/envo/envo-edit.owl
@@ -3177,12 +3177,14 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001851>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001852>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001853>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001854>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001855>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001856>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001857>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001858>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001859>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001860>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001861>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001863>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001864>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001865>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001866>))
@@ -3211,13 +3213,16 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001888>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001889>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001890>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001891>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001892>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001893>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001894>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001895>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001896>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001897>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001898>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001899>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001900>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001901>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003002>))
@@ -17470,7 +17475,6 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_00010483>
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_00010483> "Instances of this class are portions of environmental materials, such as seawater in bucket, a water parcel in the photic zone of a lake, or the concrete that composes a building part. Instances of these portions may have fiat or non-fiat boundaries. For example, a water parcel has not physical boundaries, while the seawater in a bucket is bounded by the internal surfaces of the bucket."@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00010483> "environmental material")
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00010483> <http://purl.obolibrary.org/obo/BFO_0000040>)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00010483> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002473> <http://purl.obolibrary.org/obo/CHEBI_33839>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_00010504> (surface layer)
 
@@ -36568,6 +36572,16 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001854> "h
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001854> <http://purl.obolibrary.org/obo/ENVO_01001851>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001854> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectUnionOf(<http://purl.obolibrary.org/obo/ENVO_00000215> <http://purl.obolibrary.org/obo/ENVO_01000265> <http://purl.obolibrary.org/obo/ENVO_01001821>)))
 
+# Class: <http://purl.obolibrary.org/obo/ENVO_01001855> (autonomous reef monitoring structure)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001855> "A human construction which mimic the complex structure of the sea bottom and serve as standardised collectors of marine life."@en)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01001855> <https://orcid.org/0000-0002-4366-3088>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01001855> "2024-09-12T12:13:44Z"^^xsd:dateTime)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_01001855> "ARMS")
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01001855> "ARMS units are passive monitoring systems originally developed during the Census of Marine Life project for the collection of marine fauna on and near the sea floor. They are stacks of PVC settlement plates that are fixed to each other and to a stable base. They are deployed on marine substrates and colonised by marine species. After a period of time they are recovered and taken apart to see which species colonised them. Using ARMS units allow sampling of reef organisms without destroying or damaging natural sea bottom environments."@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001855> "autonomous reef monitoring structure"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001855> <http://purl.obolibrary.org/obo/ENVO_00000070>)
+
 # Class: <http://purl.obolibrary.org/obo/ENVO_01001856> (liquid accumulation process)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001856> "A material accumulation process during which the volume of liquid entity increases.")
@@ -36627,6 +36641,15 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001861> "shortwave radiation"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001861> <http://purl.obolibrary.org/obo/ENVO_01001026>)
 
+# Class: <http://purl.obolibrary.org/obo/ENVO_01001863> (blended biomass derived from sessile communities colonising an autonomous reef monitoring structure)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001863> "Biomass which is composed primarily of sessile communities scraped from the plates of an autonomous reef monitoring structure (ARMS) and blended."@en)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01001863> <https://orcid.org/0000-0002-4366-3088>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01001863> "2024-09-12T12:19:12Z"^^xsd:dateTime)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/ENVO_01001863> "sessile fraction"@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001863> "blended biomass derived from sessile communities colonising an autonomous reef monitoring structure"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001863> <http://purl.obolibrary.org/obo/ENVO_01000155>)
+
 # Class: <http://purl.obolibrary.org/obo/ENVO_01001864> (photosynthetically active radiation)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Photosynthetically_active_radiation>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001864> "Electromagnetic radidation which involves radiant energy in a spectral range (wave band) between 400 to 700 nanometers, that photosynthetic organisms are able to use in the process of photosynthesis.")
@@ -36908,6 +36931,15 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001891> "alum spring"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001891> <http://purl.obolibrary.org/obo/ENVO_00000125>)
 
+# Class: <http://purl.obolibrary.org/obo/ENVO_01001892> (sieved biomass derived from motile communities present in the retrieval tub of an autonomous reef monitoring structure)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001892> "Biomass which is composed primarily of motile communities sieved out of the collection tub of an autonomous reef monitoring structure (ARMS)."@en)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01001892> <https://orcid.org/0000-0002-4366-3088>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01001892> "2024-09-12T12:33:35Z"^^xsd:dateTime)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/ENVO_01001892> "motile fraction"@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001892> "sieved biomass derived from motile communities present in the retrieval tub of an autonomous reef monitoring structure"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001892> <http://purl.obolibrary.org/obo/ENVO_01000155>)
+
 # Class: <http://purl.obolibrary.org/obo/ENVO_01001893> (salt spring)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001893> "A mineral spring through which water with elevated concentrations of sodium, calcium, or magnesium salts flows."@en)
@@ -36967,6 +36999,24 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001899> "reef"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001899> <http://purl.obolibrary.org/obo/ENVO_00000012>)
 
+# Class: <http://purl.obolibrary.org/obo/ENVO_01001900> (biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 100 micrometre mesh)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001900> "Biomass which is composed primarily of motile communities sieved out of the collection tub of an autonomous reef monitoring structure (ARMS), using a 500 micrometre mesh followed by a 100 micrometre mesh."@en)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01001900> <https://orcid.org/0000-0002-4366-3088>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01001900> "2024-09-12T13:32:13Z"^^xsd:dateTime)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/ENVO_01001900> "motile 100 micrometre fraction"@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001900> "biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 100 micrometre mesh"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001900> <http://purl.obolibrary.org/obo/ENVO_01001892>)
+
+# Class: <http://purl.obolibrary.org/obo/ENVO_01001901> (biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001901> "Biomass which is composed primarily of motile communities sieved out of the collection tub of an autonomous reef monitoring structure (ARMS), using a 2 millimeter mesh followed by a 500 micrometre mesh."@en)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01001901> <https://orcid.org/0000-0002-4366-3088>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01001901> "2024-09-12T13:35:17Z"^^xsd:dateTime)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/ENVO_01001901> "motile 500 micrometre fraction"@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001901> "biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001901> <http://purl.obolibrary.org/obo/ENVO_01001892>)
+
 # Class: <http://purl.obolibrary.org/obo/ENVO_01003000> (spacecraft)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Spacecraft>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01003000> "A vehicle designed to fly in outer space."@en)