fix: gh workflow - remove daijin tests

EI-CoreBioinformatics · May 24, 2024 · 06c87ae · 06c87ae
1 parent aeed8b6
commit 06c87ae
Showing 1 changed file with 11 additions and 11 deletions.
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -94,17 +94,17 @@ jobs:
     - name: Upload coverage to Codecov
       if: startsWith(runner.os, 'Linux')
       uses: codecov/codecov-action@v1
-    - name: Test daijin
-      if: startsWith(runner.os, 'Linux')
-      run: |
-        mamba install -c bioconda -c conda-forge -y bioconda::portcullis stringtie scallop "gmap!=2021.02.22" \
-          star hisat2 prodigal blast diamond transdecoder conda-forge::gnuplot kallisto samtools gffread;
-        cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5
-    - name: Test daijin mikado
-      if: startsWith(runner.os, 'macOS')
-      run: |
-        mamba install -c bioconda -c conda-forge -y prodigal blast diamond transdecoder kallisto samtools gffread;
-        cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5 complete_no_assemble
+    # - name: Test daijin
+    #   if: startsWith(runner.os, 'Linux')
+    #   run: |
+    #     mamba install -c bioconda -c conda-forge -y bioconda::portcullis stringtie scallop "gmap!=2021.02.22" \
+    #       star hisat2 prodigal blast diamond transdecoder conda-forge::gnuplot kallisto samtools gffread;
+    #     cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5
+    # - name: Test daijin mikado
+    #   if: startsWith(runner.os, 'macOS')
+    #   run: |
+    #     mamba install -c bioconda -c conda-forge -y prodigal blast diamond transdecoder kallisto samtools gffread;
+    #     cd sample_data; snakemake --latency-wait 60 --jobs 5 --cores 5 complete_no_assemble
     - name: Test fast
       run: |
         python -c "import Mikado; Mikado.test(label='fast')";