Interactive tools to facilitate assessment of muscle organisation in Caenorhabditis elegans
Includes a segmentation of connected structures and measurement of size, shape and local thickness
Also includes an option to measure directionality Segmentation of muscle fibers relies on a directional derivative for which the plugin FeatureJ is used (written by E. Meijiering, https://imagescience.org/meijering/software/featurej/)
Elliptic fourier descriptors requires an additional plugin written by Thomas Boudier and Ben Tupper (http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:fourier_shape_analysis:start)
(Written for Ineke D'Hondt and Bart Braeckman, UGent)