GitHub Action live and deploy #75
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Cobaya Tests | |
| # for the moment only runs on "action* branches". Coverage/pypi not yet set up. | |
| on: [ push, pull_request ] | |
| env: | |
| COBAYA_INSTALL_SKIP_BASE: planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck | |
| COBAYA_PACKAGES_PATH: ../packages | |
| jobs: | |
| should_run: | |
| # only run on pushes that are not also part of PR | |
| runs-on: ubuntu-latest | |
| outputs: | |
| run_tests: github.event_name == 'push' || ${{ steps.check.outputs.run_tests }} | |
| steps: | |
| - name: Check if tests should run | |
| id: check | |
| if: github.event_name == 'push' | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{secrets.GITHUB_TOKEN}} | |
| script: | | |
| const { data: prs } = await github.rest.pulls.list({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| head: `${context.repo.owner}:${context.ref.replace('refs/heads/', '')}`, | |
| state: 'open' | |
| }); | |
| const shouldRun = prs.length === 0; | |
| core.setOutput('run_tests', shouldRun ? 'true' : 'false'); | |
| tests: | |
| needs: should_run | |
| runs-on: ${{ matrix.os }} | |
| if: github.event_name == 'pull_request' || needs.should_run.outputs.run_tests == 'true' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "Anaconda Python (flake8, no numba)" | |
| os: ubuntu-latest | |
| pydist: "ANACONDA" | |
| cobaya_skip: classy,polychord | |
| - name: "Latest Python 3.x (with polychord)" | |
| os: ubuntu-latest | |
| python-version: 3.x | |
| mpi: openmpi | |
| cobaya_skip: classy,polychord | |
| - name: "OS X Python 3.8 (with classy)" | |
| os: macos-latest | |
| python-version: 3.8 | |
| mpi: openmpi | |
| cobaya_skip: polychord | |
| - name: "Windows Python 3.12" | |
| os: windows-latest | |
| python-version: 3.12 | |
| mpi: intelmpi | |
| cobaya_skip: classy,polychord | |
| steps: | |
| - name: Set COBAYA_INSTALL_SKIP | |
| shell: bash | |
| run: echo "COBAYA_INSTALL_SKIP=$COBAYA_INSTALL_SKIP_BASE,${{ matrix.cobaya_skip }}" >> $GITHUB_ENV | |
| - run: ln -s $(which gfortran-14) /usr/local/bin/gfortran | |
| if: matrix.os == 'macos-latest' | |
| - run: | | |
| gfortran --version | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| if: matrix.pydist != 'ANACONDA' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Miniconda | |
| if: matrix.pydist == 'ANACONDA' | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-activate-base: false | |
| activate-environment: tests-environment | |
| environment-file: tests-environment.yml | |
| - name: flake8 Lint | |
| if: matrix.pydist == 'ANACONDA' | |
| shell: bash -el {0} | |
| run: | | |
| flake8 cobaya --max-line-length 90 --select=E713,E704,E703,E714,E10,E11,E20,E22,E23,E25,E27,E301,E302,E304,E9,F405,F406,F5,F6,F7,F8,W1,W2,W3,W6 --show-source --statistics | |
| - name: Install dependencies (pip) | |
| if: matrix.pydist != 'ANACONDA' | |
| run: | | |
| pip install -r requirements.txt pytest-xdist pytest-cov flaky matplotlib coverage iminuit numba camb | |
| - name: Install mpi | |
| if: matrix.pydist != 'ANACONDA' && matrix.os != 'windows-latest' | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi }} | |
| - name: Install mpi4py | |
| if: matrix.pydist != 'ANACONDA' && matrix.os != 'windows-latest' | |
| run: | | |
| pip install mpi4py -i https://pypi.anaconda.org/mpi4py/simple | |
| # - name: Cache dependencies | |
| # uses: actions/cache@v4 | |
| # with: | |
| # path: | | |
| # ${{ env.COBAYA_PACKAGES_PATH }}/data/ | |
| # key: ${{ env.COBAYA_INSTALL_SKIP }} | |
| # enableCrossOsArchive: true | |
| - name: Run cobaya install and tests | |
| shell: bash -el {0} | |
| run: | | |
| coverage run --parallel-mode -m cobaya.install polychord --debug | |
| coverage run --parallel-mode -m pytest tests/ -n auto -k "not cosmo" --skip-not-installed --no-flaky-report | |
| coverage run --parallel-mode -m cobaya.install cosmo-tests --no-progress-bars --debug --skip-global | |
| pytest tests/ --cov -vv -s -k "cosmo" -n 2 --skip-not-installed --no-flaky-report | |
| - name: Run MPI tests | |
| if: matrix.os != 'windows-latest' | |
| shell: bash -el {0} | |
| run: | | |
| mpiexec -np 2 --oversubscribe coverage run --parallel-mode -m pytest -m mpi tests/ --no-flaky-report | |
| - name: Run external likelihood tests | |
| shell: bash -el {0} | |
| run: | | |
| git clone --depth=1 https://github.com/CobayaSampler/example_external_likelihood | |
| pip install ./example_external_likelihood --quiet | |
| coverage run --parallel-mode -m unittest test_package.tests.test | |
| # - name: Upload coverage to Codecov | |
| # uses: codecov/codecov-action@v4 | |
| # with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| deploy: | |
| needs: tests | |
| runs-on: ubuntu-latest | |
| if: github.repository_owner == 'CobayaSampler' && github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') | |
| permissions: | |
| id-token: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip install -U build twine | |
| - name: Build package | |
| run: python -m build --sdist | |
| - name: Publish package | |
| uses: pypa/gh-action-pypi-publish@release/v1 |