Merge pull request #1539 from CliMA/sb/climacomms-compat

set ClimaComms compat, update Manifests

.buildkite/pipeline.yml

@@ -6,6 +6,7 @@ agents:
 env:
   JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite"
   JULIA_DEPOT_PATH: "${BUILDKITE_BUILD_PATH}/${BUILDKITE_PIPELINE_SLUG}/depot/default"
+  JULIA_MAX_NUM_PRECOMPILE_FILES: 100
   OPENBLAS_NUM_THREADS: 1
   JULIA_NVTX_CALLBACKS: gc
   JULIA_CPU_TARGET: 'broadwell;skylake'

.dev/Manifest.toml

@@ -79,9 +79,9 @@ version = "0.21.4"
 
 [[deps.JuliaFormatter]]
 deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"]
-git-tree-sha1 = "80031f6e58b09b0de4553bf63d9a36ec5db57967"
+git-tree-sha1 = "3d5b5b539e4606dcca0e6a467b98a64c8da4850b"
 uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
-version = "1.0.39"
+version = "1.0.42"
 
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
@@ -135,9 +135,9 @@ version = "1.6.2"
 
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
-git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851"
+git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.7.2"
+version = "2.8.0"
 
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
@@ -189,9 +189,9 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
 version = "1.10.0"
 
 [[deps.Tokenize]]
-git-tree-sha1 = "90538bf898832b6ebd900fa40f223e695970e3a5"
+git-tree-sha1 = "0454d9a9bad2400c7ccad19ca832a2ef5a8bc3a1"
 uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624"
-version = "0.5.25"
+version = "0.5.26"
 
 [[deps.URIs]]
 git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"

Project.toml

@@ -16,6 +16,7 @@ ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 GaussQuadrature = "d54b0c1a-921d-58e0-8e36-89d8069c0969"
 GilbertCurves = "88fa7841-ef32-4516-bb70-c6ec135699d9"
 HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
+HDF5_jll = "0234f1f7-429e-5d53-9886-15a909be8d59"
 InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
@@ -34,14 +35,15 @@ Adapt = "3"
 BandedMatrices = "0.17, 1"
 BlockArrays = "0.16"
 CUDA = "4.2, 5"
-ClimaComms = "0.5"
+ClimaComms = "0.5.6"
 CubedSphere = "0.2"
 DataStructures = "0.18"
 DocStringExtensions = "0.8, 0.9"
 ForwardDiff = "0.10"
 GaussQuadrature = "0.5"
 GilbertCurves = "0.1"
 HDF5 = "0.16, 0.17"
+HDF5_jll = "~1.12"
 InteractiveUtils = "1"
 IntervalSets = "0.5, 0.6, 0.7"
 LinearAlgebra = "1"