Update dependencies

CliMA · Jun 5, 2024 · e9e11fb · e9e11fb
1 parent 872b9a8
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Showing 4 changed files with 72 additions and 149 deletions.
diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.3"
+julia_version = "1.10.4"
 manifest_format = "2.0"
 project_hash = "b280bcf3b481823c97fa1a62c1b5e65114b8fa18"
 

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.3"
+julia_version = "1.10.4"
 manifest_format = "2.0"
 project_hash = "64afcb8dacf7a673d0068ba1a72602801e8d529a"
 
@@ -90,9 +90,9 @@ version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf"
+git-tree-sha1 = "ed2ec3c9b483842ae59cd273834e5b46206d6dda"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.10.0"
+version = "7.11.0"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
@@ -165,17 +165,11 @@ git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f"
 uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9"
 version = "0.4.7"
 
-[[deps.BFloat16s]]
-deps = ["LinearAlgebra", "Printf", "Random", "Test"]
-git-tree-sha1 = "2c7cc21e8678eff479978a0a2ef5ce2f51b63dff"
-uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"
-version = "0.5.0"
-
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "4ec0289155eac14c057229395fa7a6a54ffea343"
+git-tree-sha1 = "71f605effb24081b09cae943ba39ef9ca90c04f4"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.7.1"
+version = "1.7.2"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -257,36 +251,6 @@ git-tree-sha1 = "e329286945d0cfc04456972ea732551869af1cfc"
 uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0"
 version = "1.0.1+0"
 
-[[deps.CUDA]]
-deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"]
-git-tree-sha1 = "6e945e876652f2003e6ca74e19a3c45017d3e9f6"
-uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "5.4.2"
-weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"]
-
-    [deps.CUDA.extensions]
-    ChainRulesCoreExt = "ChainRulesCore"
-    EnzymeCoreExt = "EnzymeCore"
-    SpecialFunctionsExt = "SpecialFunctions"
-
-[[deps.CUDA_Driver_jll]]
-deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
-git-tree-sha1 = "c48f9da18efd43b6b7adb7ee1f93fe5f2926c339"
-uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
-version = "0.9.0+0"
-
-[[deps.CUDA_Runtime_Discovery]]
-deps = ["Libdl"]
-git-tree-sha1 = "5db9da5fdeaa708c22ba86b82c49528f402497f2"
-uuid = "1af6417a-86b4-443c-805f-a4643ffb695f"
-version = "0.3.3"
-
-[[deps.CUDA_Runtime_jll]]
-deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "bcba305388e16aa5c879e896726db9e71b4942c6"
-uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.14.0+1"
-
 [[deps.Cairo]]
 deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"]
 git-tree-sha1 = "d0b3f8b4ad16cb0a2988c6788646a5e6a17b6b1b"
@@ -328,22 +292,32 @@ uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 version = "0.24.2"
 
 [[deps.ClimaComms]]
-deps = ["CUDA", "MPI"]
-git-tree-sha1 = "ef5d206be51fdf62cd0cbd63058e237128652cf7"
+git-tree-sha1 = "55785e915f4fda85dcad4609aa5e53131151986b"
 uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
-version = "0.5.8"
+version = "0.6.1"
+
+    [deps.ClimaComms.extensions]
+    ClimaCommsCUDAExt = "CUDA"
+    ClimaCommsMPIExt = "MPI"
+
+    [deps.ClimaComms.weakdeps]
+    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+    MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"]
 git-tree-sha1 = "112ac9c71a8f5026b56f8373220de87e5ba706f6"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
 version = "0.14.7"
-weakdeps = ["CUDA", "Krylov"]
 
     [deps.ClimaCore.extensions]
     ClimaCoreCUDAExt = "CUDA"
     KrylovExt = "Krylov"
 
+    [deps.ClimaCore.weakdeps]
+    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+    Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
+
 [[deps.ClimaDiagnostics]]
 deps = ["Accessors", "ClimaComms", "ClimaCore", "Dates", "NCDatasets", "SciMLBase"]
 git-tree-sha1 = "aff194804df0fcfcf69a80c58978b84777272619"
@@ -541,12 +515,6 @@ git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
 version = "1.16.0"
 
-[[deps.DataFrames]]
-deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
-uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "1.6.1"
-
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
 git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
@@ -925,24 +893,12 @@ deps = ["Artifacts", "Libdl"]
 uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
 version = "6.2.1+6"
 
-[[deps.GPUArrays]]
-deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
-git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1"
-uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
-version = "10.1.1"
-
 [[deps.GPUArraysCore]]
 deps = ["Adapt"]
 git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950"
 uuid = "46192b85-c4d5-4398-a991-12ede77f4527"
 version = "0.1.6"
 
-[[deps.GPUCompiler]]
-deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "518ebd058c9895de468a8c255797b0c53fdb44dd"
-uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.26.5"
-
 [[deps.GaussQuadrature]]
 deps = ["SpecialFunctions"]
 git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d"
@@ -1024,11 +980,13 @@ deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences",
 git-tree-sha1 = "e856eef26cf5bf2b0f95f8f4fc37553c72c8641c"
 uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
 version = "0.17.2"
-weakdeps = ["MPI"]
 
     [deps.HDF5.extensions]
     MPIExt = "MPI"
 
+    [deps.HDF5.weakdeps]
+    MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
+
 [[deps.HDF5_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
 git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997"
@@ -1110,12 +1068,6 @@ git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
 version = "0.1.5"
 
-[[deps.InlineStrings]]
-deps = ["Parsers"]
-git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461"
-uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
-version = "1.4.0"
-
 [[deps.Insolation]]
 deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"]
 git-tree-sha1 = "1a2a8e1f202523619225fb54adf458b9345cee9b"
@@ -1173,11 +1125,6 @@ weakdeps = ["Dates"]
     [deps.InverseFunctions.extensions]
     DatesExt = "Dates"
 
-[[deps.InvertedIndices]]
-git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
-uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
-version = "1.3.0"
-
 [[deps.IrrationalConstants]]
 git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
@@ -1286,22 +1233,19 @@ deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires",
 git-tree-sha1 = "065c36f95709dd4a676dc6839a35d6fa6f192f24"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
 version = "7.1.0"
-weakdeps = ["BFloat16s"]
 
     [deps.LLVM.extensions]
     BFloat16sExt = "BFloat16s"
 
+    [deps.LLVM.weakdeps]
+    BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"
+
 [[deps.LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
 git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
 version = "0.0.29+0"
 
-[[deps.LLVMLoopInfo]]
-git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea"
-uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586"
-version = "1.0.0"
-
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713"
@@ -1468,20 +1412,6 @@ git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b"
 uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
 version = "2024.1.0+0"
 
-[[deps.MPI]]
-deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"]
-git-tree-sha1 = "4e3136db3735924f96632a5b40a5979f1f53fa07"
-uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195"
-version = "0.20.19"
-
-    [deps.MPI.extensions]
-    AMDGPUExt = "AMDGPU"
-    CUDAExt = "CUDA"
-
-    [deps.MPI.weakdeps]
-    AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
-    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
-
 [[deps.MPICH_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
 git-tree-sha1 = "4099bb6809ac109bfc17d521dad33763bcf026b7"
@@ -1583,11 +1513,14 @@ version = "0.2.4"
 git-tree-sha1 = "19b2f184b5882538bee0d5355b152212110e0fd2"
 uuid = "c3c07f87-98de-43f2-a76f-835b330b2cbb"
 version = "0.3.1"
-weakdeps = ["Adapt", "CUDA"]
 
     [deps.MultiBroadcastFusion.extensions]
     MultiBroadcastFusionCUDAExt = ["CUDA", "Adapt"]
 
+    [deps.MultiBroadcastFusion.weakdeps]
+    Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
+    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+
 [[deps.NCDatasets]]
 deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"]
 git-tree-sha1 = "a640912695952b074672edb5f9aaee2f7f9fd59a"
@@ -1810,12 +1743,6 @@ git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6"
 uuid = "647866c9-e3ac-4575-94e7-e3d426903924"
 version = "0.1.2"
 
-[[deps.PooledArrays]]
-deps = ["DataAPI", "Future"]
-git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
-uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
-version = "1.4.3"
-
 [[deps.PreallocationTools]]
 deps = ["Adapt", "ArrayInterface", "ForwardDiff"]
 git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc"
@@ -1884,31 +1811,23 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[deps.RRTMGP]]
-deps = ["Adapt", "Artifacts", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"]
-git-tree-sha1 = "43dba55be8b80a2af4b4e901537d9f29fcd0d2e2"
+deps = ["Adapt", "Artifacts", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"]
+git-tree-sha1 = "99c20537c2df9010863e7ee641a2ecb214898b0f"
 uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1"
-version = "0.13.4"
-weakdeps = ["ClimaParams"]
+version = "0.14.0"
 
     [deps.RRTMGP.extensions]
     CreateParametersExt = "ClimaParams"
+    RRTMGPCUDAExt = "CUDA"
+
+    [deps.RRTMGP.weakdeps]
+    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+    ClimaParams = "5c42b081-d73a-476f-9059-fd94b934656c"
 
 [[deps.Random]]
 deps = ["SHA"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
-[[deps.Random123]]
-deps = ["Random", "RandomNumbers"]
-git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7"
-uuid = "74087812-796a-5b5d-8853-05524746bad3"
-version = "1.7.0"
-
-[[deps.RandomNumbers]]
-deps = ["Random", "Requires"]
-git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111"
-uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
-version = "1.5.3"
-
 [[deps.RangeArrays]]
 git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5"
 uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d"
@@ -2063,12 +1982,6 @@ git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
 uuid = "6c6a2e73-6563-6170-7368-637461726353"
 version = "1.2.1"
 
-[[deps.SentinelArrays]]
-deps = ["Dates", "Random"]
-git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6"
-uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.4.3"
-
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.3"
+julia_version = "1.10.4"
 manifest_format = "2.0"
 project_hash = "ee43add35e84bb5015e880c7d711d4c69c8fcaf2"
 
@@ -85,9 +85,9 @@ version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf"
+git-tree-sha1 = "ed2ec3c9b483842ae59cd273834e5b46206d6dda"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.10.0"
+version = "7.11.0"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
@@ -168,9 +168,9 @@ version = "0.5.0"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "4ec0289155eac14c057229395fa7a6a54ffea343"
+git-tree-sha1 = "71f605effb24081b09cae943ba39ef9ca90c04f4"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.7.1"
+version = "1.7.2"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -320,10 +320,14 @@ uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 version = "0.24.2"
 
 [[deps.ClimaComms]]
-deps = ["CUDA", "MPI"]
-git-tree-sha1 = "ef5d206be51fdf62cd0cbd63058e237128652cf7"
+git-tree-sha1 = "55785e915f4fda85dcad4609aa5e53131151986b"
 uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
-version = "0.5.8"
+version = "0.6.1"
+weakdeps = ["CUDA", "MPI"]
+
+    [deps.ClimaComms.extensions]
+    ClimaCommsCUDAExt = "CUDA"
+    ClimaCommsMPIExt = "MPI"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"]
@@ -1940,14 +1944,15 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[deps.RRTMGP]]
-deps = ["Adapt", "Artifacts", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"]
-git-tree-sha1 = "43dba55be8b80a2af4b4e901537d9f29fcd0d2e2"
+deps = ["Adapt", "Artifacts", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"]
+git-tree-sha1 = "99c20537c2df9010863e7ee641a2ecb214898b0f"
 uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1"
-version = "0.13.4"
-weakdeps = ["ClimaParams"]
+version = "0.14.0"
+weakdeps = ["CUDA", "ClimaParams"]
 
     [deps.RRTMGP.extensions]
     CreateParametersExt = "ClimaParams"
+    RRTMGPCUDAExt = "CUDA"
 
 [[deps.Random]]
 deps = ["SHA"]