Remove unused packages

CliMA · Sep 2, 2024 · 584bec1 · 584bec1
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commit 584bec1
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Showing 7 changed files with 17 additions and 28 deletions.
diff --git a/Project.toml b/Project.toml
@@ -21,21 +21,16 @@ DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
 FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838"
 Insolation = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8"
 Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
-Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
 LazyArtifacts = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab"
 NVTX = "5da4648a-3479-48b8-97b9-01cb529c0a1f"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 RRTMGP = "a01a1ee8-cea4-48fc-987c-fc7878d79da1"
-Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
-RootSolvers = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74"
 SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
-StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 SurfaceFluxes = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f"
 Thermodynamics = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c"
 YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
@@ -58,22 +53,17 @@ DiffEqBase = "6.145"
 FastGaussQuadrature = "0.5, 1"
 Insolation = "0.9.2"
 Interpolations = "0.15.1"
-Krylov = "0.9"
 LazyArtifacts = "1"
 LinearAlgebra = "1"
 Logging = "1"
 NCDatasets = "0.14.2"
 NVTX = "0.3"
 Pkg = "1.9"
-Printf = "1"
 RRTMGP = "0.17"
-Random = "1"
-RootSolvers = "0.4"
 SciMLBase = "2.12"
 StaticArrays = "1.7"
 Statistics = "1"
-StatsBase = "0.34"
-SurfaceFluxes = "0.11"
+SurfaceFluxes = "0.11, 0.12"
 Thermodynamics = "0.12.4"
 YAML = "0.4"
 julia = "1.9"
diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -297,7 +297,7 @@ weakdeps = ["SparseArrays"]
     ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.ClimaAtmos]]
-deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "Krylov", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"]
+deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "RRTMGP", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 version = "0.27.4"
@@ -1045,10 +1045,10 @@ version = "0.17.2"
     MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
 
 [[deps.HDF5_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
-git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
+git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
-version = "1.14.2+1"
+version = "1.14.3+3"
 
 [[deps.HarfBuzz_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"]
@@ -1708,10 +1708,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
 version = "1.0.2"
 
 [[deps.NetCDF_jll]]
-deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
-git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15"
+deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
+git-tree-sha1 = "4686378c4ae1d1948cfbe46c002a11a4265dcb07"
 uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3"
-version = "400.902.209+0"
+version = "400.902.211+1"
 
 [[deps.Netpbm]]
 deps = ["FileIO", "ImageCore", "ImageMetadata"]
@@ -1804,10 +1804,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+2"
 
 [[deps.OpenMPI_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"]
-git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
+git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762"
 uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "5.0.5+0"
+version = "4.1.6+0"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -321,7 +321,7 @@ version = "0.5.7"
     Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
 
 [[deps.ClimaAtmos]]
-deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "Krylov", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"]
+deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "RRTMGP", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 version = "0.27.4"

diff --git a/perf/Manifest.toml b/perf/Manifest.toml
@@ -332,7 +332,7 @@ version = "0.5.6"
     GeoMakie = "db073c08-6b98-4ee5-b6a4-5efafb3259c6"
 
 [[deps.ClimaAtmos]]
-deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "Krylov", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"]
+deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "RRTMGP", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 version = "0.27.4"

diff --git a/src/parameterized_tendencies/radiation/radiation.jl b/src/parameterized_tendencies/radiation/radiation.jl
@@ -11,7 +11,7 @@ import RRTMGP
 import .RRTMGPInterface as RRTMGPI
 
 import Interpolations
-using StatsBase: mean
+using Statistics: mean
 
 
 radiation_model_cache(Y, atmos::AtmosModel, args...) =

diff --git a/src/utils/read_gcm_driven_scm_data.jl b/src/utils/read_gcm_driven_scm_data.jl
@@ -1,6 +1,6 @@
 # Utilities for reading NetCDF data for GCM-driven single-column simulations.
 import NCDatasets as NC
-import StatsBase: mean
+import Statistics: mean
 
 """
     gcm_driven_profile_tmean(ds, varname)

diff --git a/src/utils/utilities.jl b/src/utils/utilities.jl
@@ -266,7 +266,6 @@ using ClimaComms
 is_distributed(::ClimaComms.SingletonCommsContext) = false
 is_distributed(::ClimaComms.MPICommsContext) = true
 
-using Printf
 # From BenchmarkTools
 function prettytime(t)
     if t < 1e3
@@ -278,7 +277,7 @@ function prettytime(t)
     else
         value, units = t / 1e9, "s"
     end
-    return @sprintf("%.3f %s", value, units)
+    return "$(round(value, digits=3)) $units"
 end
 
 import Dates
@@ -317,7 +316,7 @@ function prettymemory(b)
     else
         value, units = b / 1024^3, "GiB"
     end
-    return @sprintf("%.2f %s", value, units)
+    return "$(round(value, digits=2)) $units"
 end
 
 """