Merge pull request #3284 from CliMA/ar/v0.27.5

tag v0.27.5

NEWS.md

@@ -3,6 +3,9 @@ ClimaAtmos.jl Release Notes
 
 Main
 -------
+
+v0.27.5
+-------
 - Update RRTMGP and allow multiple aerosols for radiation.
   Note: Don't use sea salt as there is an issue with the lookup
   table. PR [#3264](https://github.com/CliMA/ClimaAtmos.jl/pull/3264)

Project.toml

@@ -1,7 +1,7 @@
 name = "ClimaAtmos"
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 authors = ["Climate Modeling Alliance"]
-version = "0.27.4"
+version = "0.27.5"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"

docs/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.4"
+julia_version = "1.10.5"
 manifest_format = "2.0"
 project_hash = "64afcb8dacf7a673d0068ba1a72602801e8d529a"
 
@@ -300,7 +300,7 @@ weakdeps = ["SparseArrays"]
 deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.27.4"
+version = "0.27.5"
 
 [[deps.ClimaComms]]
 git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef"
@@ -331,15 +331,15 @@ version = "0.14.12"
 
 [[deps.ClimaDiagnostics]]
 deps = ["Accessors", "ClimaComms", "ClimaCore", "Dates", "NCDatasets", "SciMLBase"]
-git-tree-sha1 = "4f8abbf3af5a78b36bc40a33ef7e3fa1d3e8f138"
+git-tree-sha1 = "0c60c2b40b0c5ae87690734e2aedea5a8c686e91"
 uuid = "1ecacbb8-0713-4841-9a07-eb5aa8a2d53f"
-version = "0.2.4"
+version = "0.2.5"
 
 [[deps.ClimaParams]]
-deps = ["DocStringExtensions", "TOML", "Test"]
-git-tree-sha1 = "56f4b28affba295c0cbc81d9684ddc759af04bfc"
+deps = ["TOML"]
+git-tree-sha1 = "b43ca371c435056129295445122ea87fd843b505"
 uuid = "5c42b081-d73a-476f-9059-fd94b934656c"
-version = "0.10.13"
+version = "0.10.14"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
@@ -562,10 +562,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 version = "1.9.1"
 
 [[deps.DiffEqBase]]
-deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "4cb796ab54311147b9c7191d34d502693b603a22"
+deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
+git-tree-sha1 = "d7d43a1cc11dc4e4e5378816ae720fccd75a77c8"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.154.0"
+version = "6.155.0"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseCUDAExt = "CUDA"
@@ -688,9 +688,9 @@ version = "0.9.3"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"]
-git-tree-sha1 = "9d29b99b6b2b6bc2382a4c8dbec6eb694f389853"
+git-tree-sha1 = "5a1ee886566f2fa9318df1273d8b778b9d42712d"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "1.6.0"
+version = "1.7.0"
 
 [[deps.DocumenterCitations]]
 deps = ["AbstractTrees", "Bibliography", "Dates", "Documenter", "Logging", "Markdown", "MarkdownAST", "OrderedCollections", "Unicode"]
@@ -1051,10 +1051,10 @@ version = "0.17.2"
     MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
 
 [[deps.HDF5_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
-git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
+git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
-version = "1.14.2+1"
+version = "1.14.3+3"
 
 [[deps.HarfBuzz_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"]
@@ -1714,10 +1714,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
 version = "1.0.2"
 
 [[deps.NetCDF_jll]]
-deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
-git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15"
+deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
+git-tree-sha1 = "4686378c4ae1d1948cfbe46c002a11a4265dcb07"
 uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3"
-version = "400.902.209+0"
+version = "400.902.211+1"
 
 [[deps.Netpbm]]
 deps = ["FileIO", "ImageCore", "ImageMetadata"]
@@ -1810,10 +1810,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+2"
 
 [[deps.OpenMPI_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"]
-git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
+git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762"
 uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "5.0.5+0"
+version = "4.1.6+0"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -2156,9 +2156,9 @@ version = "0.6.43"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "68b3101ad9f4b08b29c6ce59e912a411eecb7eb6"
+git-tree-sha1 = "303a73db99326a8be43e695fbab9e076b02118ca"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.51.4"
+version = "2.52.2"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2748,7 +2748,7 @@ version = "0.15.2+0"
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
-version = "5.8.0+1"
+version = "5.11.0+0"
 
 [[deps.libfdk_aac_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]

examples/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.4"
+julia_version = "1.10.5"
 manifest_format = "2.0"
 project_hash = "f170b98e0622d3f170fe6045d8258f49ebd31345"
 
@@ -324,7 +324,7 @@ version = "0.5.7"
 deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.27.4"
+version = "0.27.5"
 
 [[deps.ClimaComms]]
 git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef"
@@ -379,15 +379,15 @@ version = "0.7.6"
 
 [[deps.ClimaDiagnostics]]
 deps = ["Accessors", "ClimaComms", "ClimaCore", "Dates", "NCDatasets", "SciMLBase"]
-git-tree-sha1 = "4f8abbf3af5a78b36bc40a33ef7e3fa1d3e8f138"
+git-tree-sha1 = "0c60c2b40b0c5ae87690734e2aedea5a8c686e91"
 uuid = "1ecacbb8-0713-4841-9a07-eb5aa8a2d53f"
-version = "0.2.4"
+version = "0.2.5"
 
 [[deps.ClimaParams]]
-deps = ["DocStringExtensions", "TOML", "Test"]
-git-tree-sha1 = "56f4b28affba295c0cbc81d9684ddc759af04bfc"
+deps = ["TOML"]
+git-tree-sha1 = "b43ca371c435056129295445122ea87fd843b505"
 uuid = "5c42b081-d73a-476f-9059-fd94b934656c"
-version = "0.10.13"
+version = "0.10.14"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
@@ -429,9 +429,9 @@ version = "0.1.13"
 
 [[deps.CloudMicrophysics]]
 deps = ["ClimaParams", "DocStringExtensions", "ForwardDiff", "HCubature", "LazyArtifacts", "QuadGK", "RootSolvers", "SpecialFunctions", "Thermodynamics"]
-git-tree-sha1 = "26ae1a08520651f7de266e6c76c06521ce7c54bb"
+git-tree-sha1 = "86c154ff7a7850b7a5cb2aa4b409933a865b1de8"
 uuid = "6a9e3e04-43cd-43ba-94b9-e8782df3c71b"
-version = "0.22.2"
+version = "0.22.3"
 
     [deps.CloudMicrophysics.extensions]
     EmulatorModelsExt = ["DataFrames", "MLJ"]
@@ -538,14 +538,14 @@ uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
 version = "0.2.3"
 
 [[deps.ConstructionBase]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "a33b7ced222c6165f624a3f2b55945fac5a598d9"
+git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157"
 uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
-version = "1.5.7"
-weakdeps = ["IntervalSets", "StaticArrays"]
+version = "1.5.8"
+weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"]
 
     [deps.ConstructionBase.extensions]
     ConstructionBaseIntervalSetsExt = "IntervalSets"
+    ConstructionBaseLinearAlgebraExt = "LinearAlgebra"
     ConstructionBaseStaticArraysExt = "StaticArrays"
 
 [[deps.Contour]]
@@ -565,10 +565,10 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
 version = "4.1.1"
 
 [[deps.CubedSphere]]
-deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
-git-tree-sha1 = "10134667d7d3569b191a65801514271b8a93b292"
+deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries"]
+git-tree-sha1 = "049f692019f52ad3b043edf20ef25ebd7b38eb94"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
-version = "0.2.5"
+version = "0.2.6"
 
 [[deps.DataAPI]]
 git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
@@ -598,9 +598,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
 [[deps.DelaunayTriangulation]]
 deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"]
-git-tree-sha1 = "88a2c530da3dd3bf4282267925d2c16c8efcd3fc"
+git-tree-sha1 = "9903123ab7fc5e55053292aff04ff5d7aff92633"
 uuid = "927a84f5-c5f4-47a5-9785-b46e178433df"
-version = "1.1.4"
+version = "1.3.0"
 
 [[deps.DelimitedFiles]]
 deps = ["Mmap"]
@@ -664,9 +664,9 @@ version = "1.15.1"
 
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"]
-git-tree-sha1 = "e53e4eb7f8e7b25656ea17263b0c22f129091eeb"
+git-tree-sha1 = "9b23f9a816790b8ab9914c3c86321a546e92cbe7"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
-version = "0.5.15"
+version = "0.5.17"
 
     [deps.DifferentiationInterface.extensions]
     DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
@@ -995,11 +995,16 @@ git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d"
 uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969"
 version = "0.5.8"
 
+[[deps.GeoFormatTypes]]
+git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271"
+uuid = "68eda718-8dee-11e9-39e7-89f7f65f511f"
+version = "0.4.2"
+
 [[deps.GeoInterface]]
-deps = ["Extents"]
-git-tree-sha1 = "9fff8990361d5127b770e3454488360443019bb3"
+deps = ["Extents", "GeoFormatTypes"]
+git-tree-sha1 = "5921fc0704e40c024571eca551800c699f86ceb4"
 uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
-version = "1.3.5"
+version = "1.3.6"
 
 [[deps.GeometryBasics]]
 deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
@@ -1275,9 +1280,9 @@ version = "0.9.8"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
-git-tree-sha1 = "a0746c21bdc986d0dc293efa6b1faee112c37c28"
+git-tree-sha1 = "1dbe274ad1c199490b19a153b60a9e46c5386f8d"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.53"
+version = "0.5.1"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -1924,9 +1929,9 @@ version = "4.1.6+0"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "a028ee3cb5641cccc4c24e90c36b0a4f7707bdf5"
+git-tree-sha1 = "1b35263570443fdd9e76c76b7062116e2f374ab8"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.0.14+0"
+version = "3.0.15+0"
 
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
@@ -2294,9 +2299,9 @@ version = "0.6.43"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "68b3101ad9f4b08b29c6ce59e912a411eecb7eb6"
+git-tree-sha1 = "303a73db99326a8be43e695fbab9e076b02118ca"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.51.4"
+version = "2.52.2"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2587,9 +2592,9 @@ weakdeps = ["ClimaParams"]
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "c9fce29fb41a10677e24f74421ebe31220b81ad0"
+git-tree-sha1 = "988e04b34a4c3b824fb656f542473df99a4f610d"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.28"
+version = "0.3.30"
 
 [[deps.TOML]]
 deps = ["Dates"]
@@ -2615,13 +2620,14 @@ version = "1.10.0"
 
 [[deps.TaylorSeries]]
 deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
-git-tree-sha1 = "1c7170668366821b0c4c4fe03ee78f8d6cf36e2c"
+git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2"
 uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
-version = "0.16.0"
-weakdeps = ["IntervalArithmetic"]
+version = "0.17.3"
+weakdeps = ["IntervalArithmetic", "StaticArrays"]
 
     [deps.TaylorSeries.extensions]
     TaylorSeriesIAExt = "IntervalArithmetic"
+    TaylorSeriesSAExt = "StaticArrays"
 
 [[deps.TempestRemap_jll]]
 deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll"]
@@ -2879,7 +2885,7 @@ version = "0.15.2+0"
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
-version = "5.8.0+1"
+version = "5.11.0+0"
 
 [[deps.libfdk_aac_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]