Merge #2243

2243: update dependencies r=szy21 a=szy21 Co-authored-by: Zhaoyi Shen <[email protected]>
CliMA · Oct 17, 2023 · 277adcf · 277adcf
2 parents f8d6d46 + a52a4c6
commit 277adcf
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diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -147,9 +147,9 @@ weakdeps = ["SparseArrays"]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[deps.BibInternal]]
-git-tree-sha1 = "3a760b38ba8da19e64d29244f06104823ff26f25"
+git-tree-sha1 = "0c62b284a52ec39ee831e10bf62c17d587dde75f"
 uuid = "2027ae74-3657-4b95-ae00-e2f7d55c3e64"
-version = "0.3.4"
+version = "0.3.5"
 
 [[deps.BibParser]]
 deps = ["BibInternal", "DataStructures", "Dates", "JSONSchema", "YAML"]
@@ -159,9 +159,9 @@ version = "0.2.1"
 
 [[deps.Bibliography]]
 deps = ["BibInternal", "BibParser", "DataStructures", "Dates", "FileIO", "YAML"]
-git-tree-sha1 = "b506db2482a8e110622ddf1fd0f78bce381af032"
+git-tree-sha1 = "520c679daed011ce835d9efa7778863aad6687ed"
 uuid = "f1be7e48-bf82-45af-a471-ae754a193061"
-version = "0.2.19"
+version = "0.2.20"
 
 [[deps.BitTwiddlingConvenienceFunctions]]
 deps = ["Static"]
@@ -370,9 +370,9 @@ version = "4.1.1"
 
 [[deps.CubedSphere]]
 deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
-git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f"
+git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.CustomUnitRanges]]
 git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a"
@@ -449,9 +449,9 @@ version = "6.133.1"
 
 [[deps.DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e"
+git-tree-sha1 = "6cb07ea2557f425a5464ab1bd21c50464368c1a2"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "2.33.0"
+version = "2.33.1"
 
     [deps.DiffEqCallbacks.weakdeps]
     OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -821,9 +821,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "c11d691a0dc8e90acfa4740d293ade57f68bfdbb"
+git-tree-sha1 = "572d024660119ee626938419c14db0db5f3f3283"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.35"
+version = "0.4.36"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -984,9 +984,9 @@ version = "2.5.2"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d"
+git-tree-sha1 = "9f27ba34f5821a0495efb09ea3a465c31326495a"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.9.2"
+version = "2.10.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
@@ -1238,9 +1238,9 @@ version = "6.58.0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8"
+git-tree-sha1 = "d1b5f455bdd787aa7ac35d1f31f0bdb5d396ba27"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.26"
+version = "0.11.27"
 
 [[deps.PackageExtensionCompat]]
 git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518"
@@ -1780,10 +1780,13 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 version = "0.5.23"
 
 [[deps.TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "7c9196c8c83802d7b8ca7a6551a0236edd3bf731"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.0"
+weakdeps = ["Random", "Test"]
+
+    [deps.TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
 
 [[deps.TriangularSolve]]
 deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -200,9 +200,9 @@ version = "0.1.2"
 
 [[deps.CLIMAParameters]]
 deps = ["DocStringExtensions", "TOML", "Test"]
-git-tree-sha1 = "e1820c154d02ba381e9a91ea7a5870b282d32abc"
+git-tree-sha1 = "d635b0e0ae4c0ba2213aac07a1c07e3b4fce5a00"
 uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53"
-version = "0.7.22"
+version = "0.7.23"
 
 [[deps.CPUSummary]]
 deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
@@ -359,9 +359,9 @@ version = "1.3.5"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.ColorBrewer]]
 deps = ["Colors", "JSON", "Test"]
@@ -469,9 +469,9 @@ version = "4.1.1"
 
 [[deps.CubedSphere]]
 deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
-git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f"
+git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.CustomUnitRanges]]
 git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a"
@@ -554,9 +554,9 @@ version = "6.133.1"
 
 [[deps.DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e"
+git-tree-sha1 = "6cb07ea2557f425a5464ab1bd21c50464368c1a2"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "2.33.0"
+version = "2.33.1"
 
     [deps.DiffEqCallbacks.weakdeps]
     OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -683,9 +683,9 @@ uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
 version = "0.1.10"
 
 [[deps.Extents]]
-git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99"
+git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c"
 uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
-version = "0.1.1"
+version = "0.1.2"
 
 [[deps.FFMPEG]]
 deps = ["FFMPEG_jll"]
@@ -1135,15 +1135,15 @@ version = "0.8.15"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "c11d691a0dc8e90acfa4740d293ade57f68bfdbb"
+git-tree-sha1 = "572d024660119ee626938419c14db0db5f3f3283"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.35"
+version = "0.4.36"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -1402,9 +1402,9 @@ version = "2.5.2"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d"
+git-tree-sha1 = "9f27ba34f5821a0495efb09ea3a465c31326495a"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.9.2"
+version = "2.10.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
@@ -1615,9 +1615,9 @@ version = "0.11.9"
 
 [[deps.NCRegressionTests]]
 deps = ["NCDatasets", "OrderedCollections", "PrettyTables", "Test"]
-git-tree-sha1 = "0706d3de5d2f7013fd4645e8279cf4e0ac4cd532"
+git-tree-sha1 = "708b10ffe0bc0a75f6d105eafc943da8090341c6"
 uuid = "1789bc09-29e6-4c93-9c75-fe2179693664"
-version = "0.2.1"
+version = "0.2.2"
 
 [[deps.NLSolversBase]]
 deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
@@ -1770,9 +1770,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8"
+git-tree-sha1 = "d1b5f455bdd787aa7ac35d1f31f0bdb5d396ba27"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.26"
+version = "0.11.27"
 
 [[deps.PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
@@ -2875,9 +2875,9 @@ version = "3.2.9+0"
 
 [[deps.fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
 
 [[deps.gperf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]

diff --git a/perf/Manifest.toml b/perf/Manifest.toml
@@ -370,9 +370,9 @@ version = "1.3.5"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.ColorBrewer]]
 deps = ["Colors", "JSON", "Test"]
@@ -486,9 +486,9 @@ version = "2.9.3"
 
 [[deps.CubedSphere]]
 deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
-git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f"
+git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.CustomUnitRanges]]
 git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a"
@@ -571,9 +571,9 @@ version = "6.133.1"
 
 [[deps.DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e"
+git-tree-sha1 = "6cb07ea2557f425a5464ab1bd21c50464368c1a2"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "2.33.0"
+version = "2.33.1"
 
     [deps.DiffEqCallbacks.weakdeps]
     OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -712,9 +712,9 @@ uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
 version = "0.1.10"
 
 [[deps.Extents]]
-git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99"
+git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c"
 uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
-version = "0.1.1"
+version = "0.1.2"
 
 [[deps.FFMPEG]]
 deps = ["FFMPEG_jll"]
@@ -1182,15 +1182,15 @@ version = "0.8.15"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "c11d691a0dc8e90acfa4740d293ade57f68bfdbb"
+git-tree-sha1 = "572d024660119ee626938419c14db0db5f3f3283"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.35"
+version = "0.4.36"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -1454,9 +1454,9 @@ version = "2.5.2"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d"
+git-tree-sha1 = "9f27ba34f5821a0495efb09ea3a465c31326495a"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.9.2"
+version = "2.10.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
@@ -1816,9 +1816,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8"
+git-tree-sha1 = "d1b5f455bdd787aa7ac35d1f31f0bdb5d396ba27"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.26"
+version = "0.11.27"
 
 [[deps.PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
@@ -2969,9 +2969,9 @@ version = "3.2.9+0"
 
 [[deps.fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
 
 [[deps.gperf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]