If first time using:

git clone https://github.com/ChristianMichelsen/NetworkSIR
cd NetworkSIR
conda env create -f environment.yaml

(or, if already installed)

conda env update --file environment.yaml

Then:

conda activate NetworkSIR

Generate Simulations:

python generate_simulations.py

Plot the results:

python generate_plots.py

Make animations

python generate_animations.py