Update test_stardist.yml

CellProfiler · Aug 1, 2023 · 0f7656c · 0f7656c
1 parent 6bac260
commit 0f7656c
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/test_stardist.yml b/.github/workflows/test_stardist.yml
@@ -9,7 +9,7 @@ on:
 
 jobs:
   build_cellprofiler:
-    name: Build CellProfiler
+    name: Test CellProfiler-Stardist
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
@@ -46,10 +46,10 @@ jobs:
           pip install wxPython-4.1.0-cp38-cp38-linux_x86_64.whl
           pip install --upgrade pip setuptools wheel
           pip install numpy
+          pip install git+https://github.com/CellProfiler/centrosome.git@cython3
           
       - name: Run stardist plugin pipeline
         run: |
-          pip uninstall -y cellpose torch
           pip install -e .[stardist]
           python -m cellprofiler -c -r -p ./tests/headless_test/4.2.5_plugins_test_pipeline_STARDIST.cppipe -i ./tests/headless_test/test_pipeline_img -o . --plugins-directory=./active_plugins --log-level=DEBUG 2>&1 | tee logfile
           sh ./tests/headless_test/test_run.sh "module runstardist" logfile