v2.6.0

COBREXA v2.6.0

Diff since v2.5.0

Merged pull requests:

• Patch bound constructors (#85) (@stelmo)

v2.5.0

COBREXA v2.5.0

Diff since v2.4.0

Merged pull requests:

• small cleaning (#79) (@exaexa)
• add an explicit warning about what happens if people gapfill pseudoreactions (#80) (@exaexa)
• Generalize enzymes (#82) (@stelmo)

Closed issues:

• Gap filling produces nonempty result when filling a model that is already feasible (#78)

v2.4.0

COBREXA v2.4.0

Diff since v2.3.1

Merged pull requests:

• simplify unsigned constraints a bit (#77) (@exaexa)

v2.3.1

COBREXA v2.3.1

Diff since v2.3.0

Merged pull requests:

• add a few packages to the docker (#75) (@exaexa)
• use a parallel reduction for isozyme_amount_variables (#76) (@exaexa)

v2.3.0

COBREXA v2.3.0

Diff since v2.2.2

Merged pull requests:

• implement gapfilling (#74) (@exaexa)

Closed issues:

• check if docker containers are tagged properly on releases (#46)
• Gap-filling / knock-in support (#73)

v2.2.2

COBREXA v2.2.2

Diff since v2.2.1

Merged pull requests:

• trigger CI on tags instd of releases (seems more reliable) (#47) (@exaexa)
• document ecFVA (#68) (@exaexa)
• document cyclefreeflux (#69) (@exaexa)
• refer to the @edit macro (#70) (@exaexa)
• bump v2.2.2 (#71) (@exaexa)

Closed issues:

• Feature: CycleFreeFluxes (#29)
• Docs: Refer to the possibility to use @edit in julia session to see what the code does (#52)
• MAT model not loading (#66)
• Feature: enzyme constrained FVA function (#67)

v2.2.1

COBREXA v2.2.1

Diff since v2.2.0

Merged pull requests:

• stabilize the FBC interface (#65) (@exaexa)

v2.2.0

COBREXA v2.2.0

Diff since v2.1.0

Merged pull requests:

• Fix warning box in mmdf section (#56) (@stelmo)
• document why people should use cobrexa (#59) (@exaexa)
• try switching the tutorials from glpk to highs, see what happens (#60) (@exaexa)
• improve the type&conversion handling around IO (#63) (@exaexa)

Closed issues:

• Switch all documentation over from GLPK to HiGHs (#57)
• Documentation request: Comparisons to cobrapy, COBRA.jl, RAVEN etc (#58)
• Saving StandardModel makes a model in wrong format (#62)

v2.1.0

COBREXA v2.1.0

Diff since v2.0.2

Merged pull requests:

• allow direct CTs in cFBA (#51) (@exaexa)
• implement bounds removal (helpful for sign splitting) (#54) (@exaexa)
• fix README a lil bit (#55) (@exaexa)

v2.0.2

COBREXA v2.0.2

Diff since v2.0.1

Merged pull requests:

• allow easier default bounds for community building (#50) (@exaexa)
• fix sign-splitting of unbounded values (#53) (@exaexa)