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COBREXA · Jan 30, 2024 · f6fdb57 · f6fdb57
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diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-01-30T13:36:04","documenter_version":"1.2.1"}}
+{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-01-30T15:30:35","documenter_version":"1.2.1"}}
diff --git a/dev/assets/documenter.js b/dev/assets/documenter.js
diff --git a/dev/concepts/1_screen/index.html b/dev/concepts/1_screen/index.html
diff --git a/dev/concepts/index.html b/dev/concepts/index.html
diff --git a/dev/distributed/1_functions/index.html b/dev/distributed/1_functions/index.html
diff --git a/dev/distributed/2_parallel/index.html b/dev/distributed/2_parallel/index.html
diff --git a/dev/distributed/3_slurm/index.html b/dev/distributed/3_slurm/index.html
diff --git a/dev/distributed/index.html b/dev/distributed/index.html
diff --git a/dev/examples/01-loading-and-saving/index.html b/dev/examples/01-loading-and-saving/index.html
diff --git a/dev/examples/02-flux-balance-analysis/index.html b/dev/examples/02-flux-balance-analysis/index.html
diff --git a/dev/examples/02a-optimizer-parameters/index.html b/dev/examples/02a-optimizer-parameters/index.html
diff --git a/dev/examples/02b-model-modifications/index.html b/dev/examples/02b-model-modifications/index.html
diff --git a/dev/examples/02c-constraint-modifications/index.html b/dev/examples/02c-constraint-modifications/index.html
diff --git a/dev/examples/03-parsimonious-flux-balance.ipynb b/dev/examples/03-parsimonious-flux-balance.ipynb
@@ -11,7 +11,7 @@
    "cell_type": "markdown",
    "source": [
     "We will use `parsimonious_flux_balance_analysis` and\n",
-    "`minimize_metabolic_adjustment` to find the optimal flux\n",
+    "`minimization_of_metabolic_adjustment` to find the optimal flux\n",
     "distribution in the *E. coli* \"core\" model.\n",
     "\n",
     "TODO pFBA citation"

diff --git a/dev/examples/03-parsimonious-flux-balance/index.html b/dev/examples/03-parsimonious-flux-balance/index.html
diff --git a/dev/examples/04-minimization-of-metabolic-adjustment/index.html b/dev/examples/04-minimization-of-metabolic-adjustment/index.html
diff --git a/dev/examples/05-enzyme-constrained-models/index.html b/dev/examples/05-enzyme-constrained-models/index.html
diff --git a/dev/examples/06-mmdf/index.html b/dev/examples/06-mmdf/index.html
diff --git a/dev/examples/07-loopless-models/index.html b/dev/examples/07-loopless-models/index.html
diff --git a/dev/examples/08-community-models.ipynb b/dev/examples/08-community-models.ipynb
@@ -186,7 +186,7 @@
     "Because we created the trees with interfaces, we can connect them easily to\n",
     "form a new model with the interface. For simplicity, we use the\n",
     "interface-scaling functionality of [`interface_constraints`](@ref\n",
-    "ConstraintTrees.interface_constraints) to bring in cFBA-like community member\n",
+    "COBREXA.interface_constraints) to bring in cFBA-like community member\n",
     "abundances:"
    ],
    "metadata": {}

diff --git a/dev/examples/08-community-models/index.html b/dev/examples/08-community-models/index.html
diff --git a/dev/examples/index.html b/dev/examples/index.html
diff --git a/dev/index.html b/dev/index.html
diff --git a/dev/reference/analysis/index.html b/dev/reference/analysis/index.html
diff --git a/dev/reference/builders/index.html b/dev/reference/builders/index.html
diff --git a/dev/reference/core/index.html b/dev/reference/core/index.html
diff --git a/dev/reference/frontend/index.html b/dev/reference/frontend/index.html
diff --git a/dev/reference/index.html b/dev/reference/index.html
diff --git a/dev/reference/misc/index.html b/dev/reference/misc/index.html
diff --git a/dev/reference/solver/index.html b/dev/reference/solver/index.html
diff --git a/dev/search_index.js b/dev/search_index.js
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		{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-01-30T13:36:04","documenter_version":"1.2.1"}}
		{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2024-01-30T15:30:35","documenter_version":"1.2.1"}}