Install preprocessCore manually to disable threading (#84)

* Install preprocessCore manually to disable threading

* Fix copy-paste errors

* Use disable threading in BiocManager::install

* Add type="source" to not rely on env variable + force

bioc_scripts/install_bioc_sysdeps.sh

@@ -146,6 +146,9 @@ Rscript -e 'install.packages("BiocManager", repos="https://cran.rstudio.com")'
 Rscript -e "BiocManager::install(version='$BIOC_VERSION', update=TRUE, ask=FALSE)"
 Rscript -e "BiocManager::install(c('devtools'))"
 
+## Install preprocess core manually to disable threading https://github.com/Bioconductor/bioconductor_docker/issues/22
+Rscript -e 'BiocManager::install("preprocessCore", configure.args = c(preprocessCore = "--disable-threading"), update=TRUE, force=TRUE, ask=FALSE, type="source")'
+
 ## clean up
 apt-get clean
 apt-get autoremove -y