Build container image for GHCR #208
almahmoudbuild_containers.yaml
on: schedule
Matrix: build-amd64
Matrix: build-arm64
Matrix: merge
Annotations
3 errors and 22 warnings
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build-amd64 (rocker/shiny, latest, shiny)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c bash /tmp/install_bioc_sysdeps.sh $BIOCONDUCTOR_VERSION && echo \"R_LIBS=/usr/local/lib/R/host-site-library:\\${R_LIBS}\" > /usr/local/lib/R/etc/Renviron.site && curl -OL http://bioconductor.org/checkResults/devel/bioc-LATEST/Renviron.bioc && sed -i '/^IS_BIOC_BUILD_MACHINE/d' Renviron.bioc && cat Renviron.bioc | grep -o '^[^#]*' | sed 's/export //g' >>/etc/environment && cat Renviron.bioc >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_VERSION=${BIOCONDUCTOR_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_DOCKER_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_CFLAGS=\"-I/usr/include\"' >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_LIBS=\"-lsbml\"' >> /usr/local/lib/R/etc/Renviron.site && rm -rf Renviron.bioc" did not complete successfully: exit code: 1
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merge (rocker/tidyverse, devel, tidyverse, amd64)
Process completed with exit code 2.
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merge (rocker/shiny, latest, shiny, amd64)
Unable to download artifact(s): Artifact not found for name: digests-shiny-amd64
Please ensure that your artifact is not expired and the artifact was uploaded using a compatible version of toolkit/upload-artifact.
For more information, visit the GitHub Artifacts FAQ: https://github.com/actions/toolkit/blob/main/packages/artifact/docs/faq.md
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build-amd64 (rocker/shiny, latest, shiny)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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build-amd64 (ghcr.io/bioconductor/rocker-r-ver, devel-amd64, r-ver)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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build-amd64 (ghcr.io/bioconductor/rocker-rstudio, devel-amd64, bioconductor_docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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build-amd64 (ghcr.io/bioconductor/rocker-cuda, devel-amd64, cuda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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build-amd64 (rocker/tidyverse, devel, tidyverse)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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build-amd64 (ghcr.io/bioconductor/rocker-ml, devel-amd64, ml)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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build-amd64 (ghcr.io/bioconductor/rocker-ml-verse, devel-amd64, ml-verse)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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Variables should be defined before their use:
Dockerfile#L55
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION'
More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
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merge (rocker/tidyverse, devel, tidyverse, amd64)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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merge (rocker/shiny, latest, shiny, amd64)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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merge (ghcr.io/bioconductor/rocker-rstudio, devel-amd64, bioconductor_docker, amd64,arm64)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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merge (ghcr.io/bioconductor/rocker-r-ver, devel-amd64, r-ver, amd64,arm64)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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merge (ghcr.io/bioconductor/rocker-cuda, devel-amd64, cuda, amd64)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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merge (ghcr.io/bioconductor/rocker-ml, devel-amd64, ml, amd64)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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merge (ghcr.io/bioconductor/rocker-ml-verse, devel-amd64, ml-verse, amd64)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Artifacts
Produced during runtime
| Name | Size | |
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Bioconductor~bioconductor_docker~7U2N76.dockerbuild
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201 KB |
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Bioconductor~bioconductor_docker~B7LVAJ.dockerbuild
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268 KB |
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Bioconductor~bioconductor_docker~I1265V.dockerbuild
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279 KB |
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Bioconductor~bioconductor_docker~IQLCJM.dockerbuild
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161 KB |
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Bioconductor~bioconductor_docker~KLNAA2.dockerbuild
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217 KB |
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Bioconductor~bioconductor_docker~LREGM8.dockerbuild
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282 KB |
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Bioconductor~bioconductor_docker~NAG475.dockerbuild
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217 KB |
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Bioconductor~bioconductor_docker~PFZ4VH.dockerbuild
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324 KB |
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Bioconductor~bioconductor_docker~WXAUDU.dockerbuild
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133 KB |
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digests-bioconductor_docker-amd64
Expired
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244 Bytes |
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digests-bioconductor_docker-arm64
Expired
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244 Bytes |
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digests-cuda-amd64
Expired
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244 Bytes |
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digests-ml-amd64
Expired
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244 Bytes |
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digests-ml-verse-amd64
Expired
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244 Bytes |
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digests-r-ver-amd64
Expired
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244 Bytes |
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digests-r-ver-arm64
Expired
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244 Bytes |
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digests-tidyverse-amd64
Expired
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244 Bytes |
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