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Fix naming #194

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Fix naming

Fix naming #194

Triggered via push December 19, 2024 20:15
@almahmoudalmahmoud
pushed b7f4029
devel
Status Failure
Total duration 1h 0m 16s
Billable time 35m
Artifacts 17

build_containers.yaml

on: push
Matrix: build-amd64
Matrix: build-arm64
Matrix: merge
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1 error and 15 warnings
build-amd64 (rocker/shiny, latest, shiny)
buildx failed with: ERROR: failed to solve: process "/bin/sh -c bash /tmp/install_bioc_sysdeps.sh $BIOCONDUCTOR_VERSION && echo \"R_LIBS=/usr/local/lib/R/host-site-library:\\${R_LIBS}\" > /usr/local/lib/R/etc/Renviron.site && curl -OL http://bioconductor.org/checkResults/devel/bioc-LATEST/Renviron.bioc && sed -i '/^IS_BIOC_BUILD_MACHINE/d' Renviron.bioc && cat Renviron.bioc | grep -o '^[^#]*' | sed 's/export //g' >>/etc/environment && cat Renviron.bioc >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_VERSION=${BIOCONDUCTOR_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_DOCKER_VERSION} >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_CFLAGS=\"-I/usr/include\"' >> /usr/local/lib/R/etc/Renviron.site && echo 'LIBSBML_LIBS=\"-lsbml\"' >> /usr/local/lib/R/etc/Renviron.site && rm -rf Renviron.bioc && sed -i 's/-Werror=format-security/-Wformat-security/g' /usr/local/lib/R/etc/Makeconf" did not complete successfully: exit code: 1
build-amd64 (rocker/shiny, latest, shiny)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
build-amd64 (ghcr.io/bioconductor/rocker-r-ver, devel-amd64, r-ver)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
build-amd64 (ghcr.io/bioconductor/rocker-rstudio, devel-amd64, bioconductor_docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
build-amd64 (ghcr.io/bioconductor/rocker-cuda, devel-amd64, cuda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
build-amd64 (rocker/tidyverse, devel, tidyverse)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
build-amd64 (ghcr.io/bioconductor/rocker-ml, devel-amd64, ml)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/
build-amd64 (ghcr.io/bioconductor/rocker-ml-verse, devel-amd64, ml-verse)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Variables should be defined before their use: Dockerfile#L56
UndefinedVar: Usage of undefined variable '$BIOCONDUCTOR_DOCKER_VERSION' More info: https://docs.docker.com/go/dockerfile/rule/undefined-var/

Artifacts

Produced during runtime
Name Size
Bioconductor~bioconductor_docker~7RGE7V.dockerbuild
216 KB
Bioconductor~bioconductor_docker~A4LG4P.dockerbuild
282 KB
Bioconductor~bioconductor_docker~CSQPXC.dockerbuild
165 KB
Bioconductor~bioconductor_docker~G0LP2A.dockerbuild
224 KB
Bioconductor~bioconductor_docker~N8PS8N.dockerbuild
133 KB
Bioconductor~bioconductor_docker~O0SGX7.dockerbuild
285 KB
Bioconductor~bioconductor_docker~QH19FY.dockerbuild
377 KB
Bioconductor~bioconductor_docker~QYZ23V.dockerbuild
200 KB
Bioconductor~bioconductor_docker~VKTI4A.dockerbuild
269 KB
digests-bioconductor_docker-amd64 Expired
244 Bytes
digests-bioconductor_docker-arm64 Expired
244 Bytes
digests-cuda-amd64 Expired
244 Bytes
digests-ml-amd64 Expired
244 Bytes
digests-ml-verse-amd64 Expired
244 Bytes
digests-r-ver-amd64 Expired
244 Bytes
digests-r-ver-arm64 Expired
244 Bytes
digests-tidyverse-amd64 Expired
244 Bytes