Update versions #193
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| name: Build container image for GHCR | |
| on: | |
| push: | |
| branches: | |
| - devel | |
| - RELEASE_* | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 18 * * 5' | |
| jobs: | |
| build-amd64: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| base: | |
| - {image: 'ghcr.io/bioconductor/rocker-r-ver', amdtag: 'devel-amd64', outname: 'r-ver'} | |
| - {image: 'ghcr.io/bioconductor/rocker-rstudio', amdtag: 'devel-amd64', outname: 'bioconductor_docker'} | |
| - {image: 'rocker/tidyverse', amdtag: 'devel', outname: 'tidyverse'} | |
| - {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda'} | |
| - {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml'} | |
| - {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse'} | |
| - {image: 'rocker/shiny', amdtag: 'latest', outname: 'shiny'} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free root space | |
| uses: almahmoud/free-root-space@main | |
| with: | |
| verbose: true | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Login to Dockerhub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Extract metadata for container image | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Build and push AMD64 by digest | |
| id: build | |
| uses: docker/build-push-action@v6 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=${{ matrix.base.image }} | |
| amd64_tag=${{ matrix.base.amdtag }} | |
| file: Dockerfile | |
| platforms: linux/amd64 | |
| labels: ${{ steps.meta.outputs.labels }} | |
| outputs: type=image,name=${{ steps.meta.outputs.images }},push-by-digest=true,name-canonical=true,push=true | |
| - name: Export digest | |
| run: | | |
| mkdir -p /tmp/digests | |
| digest="${{ steps.build.outputs.digest }}" | |
| touch "/tmp/digests/${digest#sha256:}" | |
| - name: Upload digest | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-amd64 | |
| path: /tmp/digests/* | |
| if-no-files-found: error | |
| retention-days: 1 | |
| build-arm64: | |
| runs-on: ubuntu-latest-arm64 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| base: | |
| - {image: 'ghcr.io/bioconductor/rocker-r-ver', armtag: 'devel-arm64', outname: 'r-ver'} | |
| - {image: 'ghcr.io/bioconductor/rocker-rstudio', armtag: 'devel-arm64', outname: 'bioconductor_docker'} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Free root space | |
| uses: almahmoud/free-root-space@main | |
| with: | |
| verbose: true | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Login to Dockerhub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Extract metadata | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Build and push ARM64 by digest | |
| id: build | |
| uses: docker/build-push-action@v6 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=${{ matrix.base.image }} | |
| arm64_tag=${{ matrix.base.armtag }} | |
| file: Dockerfile | |
| platforms: linux/arm64 | |
| labels: ${{ steps.meta.outputs.labels }} | |
| outputs: type=image,name=${{ steps.meta.outputs.images }},push-by-digest=true,name-canonical=true,push=true | |
| - name: Export digest | |
| run: | | |
| mkdir -p /tmp/digests | |
| digest="${{ steps.build.outputs.digest }}" | |
| touch "/tmp/digests/${digest#sha256:}" | |
| - name: Upload digest | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-arm64 | |
| path: /tmp/digests/* | |
| if-no-files-found: error | |
| retention-days: 1 | |
| merge: | |
| needs: [build-amd64, build-arm64] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| base: | |
| - {image: 'ghcr.io/bioconductor/rocker-r-ver', amdtag: 'devel-amd64', outname: 'r-ver', platforms: 'amd64,arm64'} | |
| - {image: 'ghcr.io/bioconductor/rocker-rstudio', amdtag: 'devel-amd64', outname: 'bioconductor_docker', platforms: 'amd64,arm64'} | |
| - {image: 'rocker/tidyverse', amdtag: 'devel', outname: 'tidyverse', platforms: 'amd64'} | |
| - {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda', platforms: 'amd64'} | |
| - {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml', platforms: 'amd64'} | |
| - {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse', platforms: 'amd64'} | |
| - {image: 'rocker/shiny', amdtag: 'latest', outname: 'shiny', platforms: 'amd64'} | |
| steps: | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Login to Dockerhub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Echo platforms to build | |
| id: buildlist | |
| shell: bash | |
| run: | | |
| PLATFORMLIST="${{matrix.base.platforms}}" | |
| IFS=','; for item in $PLATFORMLIST; do echo "$item=build" >> $GITHUB_OUTPUT; done | |
| - name: Download AMD64 digests | |
| if: steps.buildlist.outputs.amd64 == 'build' | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-amd64 | |
| path: /tmp/digests/amd64 | |
| - name: Download ARM64 digests | |
| if: steps.buildlist.outputs.arm64 == 'build' | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-arm64 | |
| path: /tmp/digests/arm64 | |
| - name: Set image tags | |
| id: meta1 | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Set image tags | |
| id: meta2 | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| docker.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Create manifest list and push | |
| run: | | |
| # Prepare tags | |
| TAGS=$(echo '${{ steps.meta2.outputs.tags }}' | tr '\n' ' ' | sed 's/ *$//') | |
| TAG_ARGS="" | |
| for tag in $TAGS; do | |
| TAG_ARGS="$TAG_ARGS -t $tag" | |
| done | |
| # Add R version tags for ghcr.io images | |
| if [[ "${{ matrix.base.image }}" == *"ghcr.io"* ]]; then | |
| R_VER=$(docker pull ${{ matrix.base.image }}:${{ matrix.base.amdtag }} 2>/dev/null && \ | |
| docker inspect ${{ matrix.base.image }}:${{ matrix.base.amdtag }} | \ | |
| jq -r '.[].Config.Env[]|select(match("^R_VERSION"))|.[index("=")+1:]') | |
| if [ ! -z "$R_VER" ]; then | |
| for tag in $TAGS; do | |
| TAG_ARGS="$TAG_ARGS -t ${tag}-R-${R_VER}" | |
| done | |
| fi | |
| fi | |
| # Add alternative tags without _docker in name | |
| if [[ "${{ matrix.base.outname }}" == *"_docker"* ]]; then | |
| for tag in $TAGS; do | |
| ALT_TAG=$(echo $tag | sed 's/_docker//') | |
| TAG_ARGS="$TAG_ARGS -t $ALT_TAG" | |
| done | |
| fi | |
| # Create manifest list | |
| DIGESTS=$(cd /tmp/digests && find . -type f -exec echo "${{ steps.meta1.outputs.images }}@sha256:{}" \; | sed 's/\.\//:/') | |
| docker buildx imagetools create $TAG_ARGS $DIGESTS | |
| - name: Inspect image | |
| run: | | |
| for tag in ${{ steps.meta2.outputs.tags }}; do | |
| docker buildx imagetools inspect $tag | |
| done |