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new verification xmls to support and showcase new functionality
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ajbaird committed Mar 7, 2018
1 parent e5e3c11 commit faaa002
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>EndotrachealTubeLeakVaried</Name>
<Description>Testing endotracheal tube leak severity.</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>ExpiratoryValveLeakVaried</Name>
<Description>Testing expiratory valve leak severity.</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>ExpiratoryValveObstructionVaried</Name>
<Description>Testing expiratory valve obstruction severity.
</Description>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>InspiratoryValveLeakVaried</Name>
<Description>Testing inspiratory valve leak severity
</Description>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>InspiratoryValveObstructionVaried</Name>
<Description>Testing inspiratory valve obstruction severity
</Description>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>MaskLeakVaried</Name>
<Description>Testing mask leak severity.</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>OxygenTankPressureLoss</Name>
<Description>Patient is injected with succinylcholine prior to the administration of oxygen via a Ventilator mask. The primary oxygen feed tank loses
begins to lose pressure. The patient is injected with additional succinylcholine and the oxygen feed is switched to the secondary tank.
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>OxygenWallPressureLoss</Name>
<Description>Patient is injected with succinylcholine prior to the administration of oxygen via a Ventilator mask. The primary oxygen feed tank loses
begins to lose pressure. The patient is injected with additional succinylcholine and the oxygen feed is switched to the secondary tank.
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>SodaLimeFailureVaried</Name>
<Description>Testing severity for soda lime failure.
</Description>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>VaporizerFailureVaried</Name>
<Description>Testing vaporizer failure severity.</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>VentilatorPressureLossVaried</Name>
<Description>Testing ventilator pressure loss severity
</Description>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>YPieceDisconnectVaried</Name>
<Description>Testing Y piece disconnect severity</Description>
<InitialParameters>
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11 changes: 7 additions & 4 deletions verification/Scenarios/Combined/Cynthia.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>Cynthia</Name>
<Description>Inject Cynthia with Midazolam. Reaction to sedative causes an airway obstruction.
An anesthesia machine mask is applied to attempt to supply Oxygen. Ketamine is administered and the airway obstruction is cleared.
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<DataRequest xsi:type="PhysiologyDataRequestData" Name="SedationLevel" Precision="2"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-SizeModifier" Precision="3"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-ReactivityModifier" Precision="3"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Rocuronium" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Midazolam" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Rocuronium" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Rocuronium" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Midazolam" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Midazolam" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
</DataRequests>


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5 changes: 3 additions & 2 deletions verification/Scenarios/Combined/Gus.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>Gus</Name>
<Description>
A Ventilator mask is placed on Gus and an anesthesia machine administers oxygen. Succinylcholine is injected and
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<DataRequest xsi:type="PhysiologyDataRequestData" Name="SedationLevel" Precision="2"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-SizeModifier" Precision="3"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-ReactivityModifier" Precision="3"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
</DataRequests>

<Action xsi:type="AdvanceTimeData">
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8 changes: 5 additions & 3 deletions verification/Scenarios/Combined/Hassan.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>Hassan</Name>
<Description>
A Ventilator mask is placed and oxygen is supplied from an anesthesia machine. Ketamine and succinylcholine
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<DataRequest xsi:type="PhysiologyDataRequestData" Name="SedationLevel" Precision="2"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-SizeModifier" Precision="3"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-ReactivityModifier" Precision="3"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
</DataRequests>

<Action xsi:type="AdvanceTimeData">
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8 changes: 5 additions & 3 deletions verification/Scenarios/Combined/Joel.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>Joel</Name>
<Description>
Airway obstruction occurs at the beginning of the scenario. The airway obstruction is removed. A Ventilator mask is placed on Joel and oxygen is supplied from an anesthesia machine.
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<DataRequest xsi:type="PhysiologyDataRequestData" Name="SedationLevel" Precision="2"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-SizeModifier" Precision="3"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-ReactivityModifier" Precision="3"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Succinylcholine" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Ketamine" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
</DataRequests>

<Action xsi:type="AdvanceTimeData">
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5 changes: 3 additions & 2 deletions verification/Scenarios/Combined/Nathan.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>Nathan</Name>
<Description>Nathan is injected with Fentanyl before a Ventilator mask is placed and oxygen is administered via an anesthesia machine.
An oxygen wall port pressure loss occurs, and then the oxygen source is transferred to another oxygen container.
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<DataRequest xsi:type="PhysiologyDataRequestData" Name="SedationLevel" Precision="2"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-SizeModifier" Precision="3"/>
<DataRequest xsi:type="PhysiologyDataRequestData" Name="PupillaryResponse-ReactivityModifier" Precision="3"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Fentanyl" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Fentanyl" Name="PlasmaConcentration" Unit="ug/L" Precision="6"/>
<DataRequest xsi:type="SubstanceDataRequestData" Substance="Fentanyl" Name="EffectSiteConcentration" Unit="ug/mL" Precision="6"/>
</DataRequests>

<Action xsi:type="AdvanceTimeData">
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>AnesthesiaMachineCompartments</Name>
<Description>Validation scenario to make sure all compartment level data requests match up with the expected results</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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2 changes: 1 addition & 1 deletion verification/Scenarios/Compartments/ChymeCompartments.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>ChymeCompartments</Name>
<Description>Validation scenario to make sure all compartment level data requests match up with the expected results</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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2 changes: 1 addition & 1 deletion verification/Scenarios/Compartments/LymphCompartments.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>LymphCompartments</Name>
<Description>Output everything from every lymph compartment</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>PulmonaryCompartments</Name>
<Description>Validation scenario to make sure all compartment level data requests match up with the expected results</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>TemperatureCompartments</Name>
<Description>Output everything from every property from these compartments</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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2 changes: 1 addition & 1 deletion verification/Scenarios/Compartments/TissueCompartments.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>TissueCompartments</Name>
<Description>Output everything from every tissue compartment for O2, CO2, and Succs</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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2 changes: 1 addition & 1 deletion verification/Scenarios/Compartments/UrineCompartments.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.2.0-beta" xsi:schemaLocation="">
<Scenario xmlns="uri:/mil/tatrc/physiology/datamodel" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" contentVersion="BioGears_6.3.0-beta" xsi:schemaLocation="">
<Name>UrineCompartments</Name>
<Description>Validation scenario to make sure all compartment level data requests match up with the expected results</Description>
<InitialParameters><PatientFile>StandardMale.xml</PatientFile></InitialParameters>
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