Discussions

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  CUDA out of Memory while training the RegressionModel

  question Further information is requested

  Rajarshi1001 asked Jun 9, 2022 in Q&A · Unanswered

  

  

  

  

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  AttributeError: partially initialized module 'jax' has no attribute 'version' (most likely due to a circular import)

  limin321 asked Dec 26, 2022 in Q&A · Unanswered

  

  

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  imune cell abundance

  question Further information is requested

  wangjiawen2013 asked Dec 14, 2022 in General · Unanswered

  

  

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  Cell2location on Slide-seq data + over 100 cell types in my single-cell reference

  good first issue Good for newcomers question Further information is requested FAQ

  frankligy asked Oct 19, 2022 in Show and tell · Unanswered

  

  

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  Which model contains final results?

  bhavyaac asked Mar 18, 2022 in Q&A · Unanswered

  

  

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  AMD GPU support

  enhancement New feature or request

  czackl asked Aug 9, 2022 in General · Unanswered

  

  

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  getting access to q05_nUMI_factors

  question Further information is requested

  Nasrine26 asked Jan 20, 2022 in Q&A · Unanswered

  

  

  

  

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  Preprocessing of scRNA reference

  livyring asked Aug 1, 2022 in Q&A · Unanswered

  

  

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  Setup amortized network for Cell2location

  enhancement New feature or request discussion FAQ

  canergen asked Jul 20, 2022 in Show and tell · Unanswered

  

  

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  Estimating proportions of broad cell types

  rhiannonk asked Jul 19, 2022 in Q&A · Unanswered

  

  

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  Marker genes

  mdhasan8 asked Jul 5, 2022 in General · Unanswered

  

  

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  Matched snRNAseq/Visium

  edward130603 asked Jul 8, 2022 in General · Answered

  

  

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  NMF outputs

  rue1996 asked May 13, 2022 in Q&A · Unanswered

  

  

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  Is it possible to use cell2location with non-spatial data?

  sam-israel asked May 16, 2022 in General · Answered

  

  

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  v0.1 release

  vitkl asked May 18, 2022 in Q&A · Unanswered

  

  

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  NMF associate spot to factor

  Nasrine26 asked Mar 30, 2022 in Q&A · Unanswered

  

  

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  Just use subpopulation as reference

  TerminatorJ asked Mar 30, 2022 in Q&A · Answered

  

  

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  Get cell type percentage in each spot

  gambalab asked Nov 11, 2021 in Q&A · Answered

  

  

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  Feedback on new user interface and tutorials (pyro & scvi-tools)

  vitkl asked Sep 2, 2021 in Ideas · Unanswered

  

  

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  Run cell2location on NanoString Data

  Mengyuan-Li1996 asked Nov 10, 2021 in Q&A · Answered

  

  

  

  

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  GPU implementation for cell2location.run_cell2location()?

  carloelle asked Jun 16, 2021 in Q&A · Answered

  

  

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  Human lymphoid organ single cell dataset integration (used in tutorial notebook)

  chsher asked Sep 16, 2021 in Q&A · Answered

  

  

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  Singularity container recipe

  JoelRV asked May 21, 2021 in Q&A · Answered

  

  

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  Giving nuclei count from segmentation for deconvolution

  Dantferno asked Sep 24, 2021 in Ideas · Answered

  

  

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  Questions about the difference between pyro-based versus old versions of cell2location

  ciciQ777 asked Sep 17, 2021 in Q&A · Answered

  

  

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