Access regression parameters

[sebastiantiesmeyer]

Hi,
thanks for your wonderful tool!
I want to apply it to visium data at the moment. In the first step, your model runs a regression over single cell expression data to determine representative cell type signatures.
Can you tell me where these signatures are stored in the final model? I wanted to access them for QC, but notoriously fail to locate them in the AnnData object.
Thanks a lot again!
--Sebastian

[vitkl]

Hi @sebastiantiesmeyer

you can find all estimated parameters of the model in adata.uns['regression_mod']['post_sample_means '] and corresponding variable, cell, cell label names in adata.uns['regression_mod']['var_names '], 'obs_names', 'fact_names'.

What kind of QC were you thinking about?