v3.1.2 - bugfix and region plotting

IntaRNA

• --outSep = user-defined column separator for tabular CSV output
• bugfix non-overlapping suboptimal enumeration
• bugfix noLP optimization (missing case of direct left-stack extension)
• CSV output:
  • new ensemble energy and partition function output for intra-molecular
    structures formed by seq1 and seq2 (Eall1, Eall2, Zall1, Zall2)
  • new total energy output Etotal = (E+Eall1+Eall2) and
    EallTotal = (Eall+Eall1+Eall2)
  • new RT output
  • new bpList output
• ensemble output:
  • Eall1|2
  • EallTotal
  • RT

auxiliary R scripts

• R/plotRegions.R - visualization of sequence regions covered by IntaRNA
  predictions, similar to the IntaRNA webserver output (thanks to @dgelsin)

Downloads (see installation guide):

• intaRNA-VERSION.tar.gz : source code distribution (see help)
• Source Code : archive of the github content for the according version (see help)