Data should be RNA-RNA interactome, generated by an HTS protocol. Since Clip-like HTS protocols have been extracting interactions based on a protein, this data will be biased towards this one protein and can not be the basis of any kind of interaction prediction. Therefore, we are excluding these protocols.
We can extract data from Paris, Liga-seq, and SPLASH.
Chira is a tool for finding the RRIs within HTS-protocols. We will use Chira to extract RRIs from the generated dataset.
We also would like to find an HTS experiment for an RNA interactome with a bacteria organism.