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- sample.fasta - README file fixes #161
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| ## sample.fasta | ||
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| The `sample.fasta` is extracted from chr1:7291263-7302041 of the hg38 human genome assembly. | ||
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| ## cpgIslandExt.hg19.bed.gz | ||
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| The `cpgIslandExt.hg19.bed.gz` is downloaded from UCSC. | ||
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| ## refGene.hg19.bed.gz | ||
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| The `refGene.hg19.bed.gz` is downloaded from UCSC. | ||
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| >chr1 | ||
| TCGTGCTGGAGTGGGGAATCTCCCTAGAGTGTATCTCGGGAGAGTGCCATGTTGTTAGGGAGAACCTAGGCTATGGAGTC | ||
| AGCCTGACCCAGTTCTGCGCTGGAGTAGTTACGTGAAAACAGTGGGCCTCAGTCTCGTCATCTGAAATGGAATTTCAGTG | ||
| CACAACTCCTAGGAGTTGTTCAGAGATGAATGTTAAGTGCCTGGCCCAGAGCCTGTTCCCAGTTGGCTGAGCTTTCCTCT | ||
| GTGTGCACGCCCCTCATCACACCAGCAAATGGTCAGCTTGTCTTCTGGGCCCTAGCGATGAATTAAGCGCTGCTGGGAGA | ||
| TCCCCTCTGGGTGTTGCTTCAGCTGCCTGACCTCAGGAGGCTGATATCACAGCAACAGCACTCACTGGGCTTTAAGCCTT | ||
| CACATTTCTTTTACTGGCAGAACTGGAAGGGCAGAGAGCCTAGCCCAGGAGTGGGTGGCCAGTGAGAACTGGGCAGCCAG | ||
| CCTGGCTCCACTCCATTGGCGGCATTGCCCTTGGACAGTTTTGGTTGTCACCCACATTTGGCTTCTTAGCTGAAACTCTA | ||
| GAGGTACATTCCTCCTTCCAACAACTGTCTGGAAACAGGAAGTGGTGCAGGGAAGAAAACCAGATGCCAGCTTCCCCCGC | ||
| TGTTTTGACTGGGCTCTGTAAATGGAAACAGCTGAGAATACTATCCAAGGGTGCGTGTGCCCATCTTAAAGCTGGTGTGT | ||
| GCATTGCAGGGAGGATGCTGGGTGCAAACATACTCTGACGTTTATATTGAATATTTTAGTTTGCAGAAATTCGCAATTAA | ||
| ATCTACTTTCCACCTACACTTTGAAAAATCCATTTATAGAAACCAAATCAAATTGGAGATCTAAGGACTGGTGGCCAGAA | ||
| ATGAAATATTTTTAAAATAAAATATATGGAGATTGAATTGCTGAAGCGCTGGCTTGTTCTGCGGCTTCCTGGGATGTGAG | ||
| CTAGAGGGAAGGCTTATTGGACAGAGCCTTCTCTGGGGATCAATTATGAACTACTCTTACGTCCTGGCAGTTTCAAAAGG | ||
| GAAAAAAAAAGTTCTTTGAAAGAACTTATTTAGCAGGCAGAGCCAATATTCTGTGTTTTCTTGAAGCCACCTTGTATTTC | ||
| AGCTTCGGTGAATATGTGTGTCTCCTGTGGATCTTTATGGGAATTGCTTGAACACTCCGGAGAGGCTGGATGTGGCATTA | ||
| AAACCACCTAACCTTTGCTCCCCCAGCCTCGCCATTCATCCTGAAGACTTAATTATTTCTCGAAAGATGATCCATACGGG | ||
| TACTGCCTTTTTCTTAGGAATGTGAGCCCAGATGCTGAATTCCCCACTCTCCGTACTCAGGAGAGAGAAGCTCAGACTCA | ||
| GCTCTGGCTTAAATTTCTGAATTGATCCCTGATTGAATTCCTCCTTTGAAAATTATCAAGAGCTGCTTAGTTTTTTCCCA | ||
| GTTCCTATGAGGGATGCCAAATCCTTGCATGCGTTTCTGCACTCCTCTGCACCCACGGACCACTCAGAGAAAATGCAACC | ||
| ATTTTGTTCAAGTGAGTTCTTATTGCCCTTCATGGGCTCAGTTCCCTTTGAGAAGACAACTGATCCCATGCCACGTGTTT | ||
| CCTGCAGCCTCGCTTCCGCCTTTAGGAAGCAGGCAGAGGAATTCCTACAGAGCACTAGGCCACCCCAGCGCCACCTCCCA | ||
| TGTCACACCAGGCAGAGGTTGGGTGGGATCTCTGGGAAGGCATGTCCTCCCTGCCTCCTGGGAATCCTGGGGAAGAACCA | ||
| CCCTAGGAAGTGGCAAGCTCCGGCGGGGTGTCCTACTCCCTGCTGGGTCACTGGAGCTTCCAGAGCCCAGGCTTCGTTGC | ||
| TTTTCTGCTGTATTCCTGCCCCCTTTCTACTGCTTTCCAGTGGACAGGGACGGGGTGGGGCTGCCTTCCTGGGAAGGGAT | ||
| TGCGCTGCAGAAGCTGGGGCTGGTAAAGGCTGGGGAGCAAATGCAGACCTTGTCTGGGTGATGAGAGACCGCCACTCGTC | ||
| TCCAGGAGCTCCCGCCAGAGGCCTGCTGTGACAAGGGATAACGTGCTGGCAGGCCACTTGTCCAAGAGAATCATTCCTTC | ||
| CTGCACCTGGACACTGTTTCAGGGCTGGCATTTCTCTGGCACTCGGTGTGAGCAAAGCCCATTTGGTCGTTTGTCAGTGA | ||
| AGACAGAAGAGTCACAATGAGCCGATTTATAGAGTACATGGGGTGTTGTGGGGCAGAGGCCCGGATGGCTCCATGATCCA | ||
| TGTGCATGTGTTCCCGGTTTTGTTTGTCATTTGCTTTCTTGCCATCCACTGGGAAATGTATTTATCACTACAGTTTGTAT | ||
| AATTTGGTGGTCTGTTTTCATCTTTTACAAGCAAAATGCTTGGTATTTCAATAAGATTGAAGGGGGGTGGAAATAGATTG | ||
| CATCCCACTTAGGACTCTCAGTGGGGGAGTCTAAACATGAATTATCCCAGCTTAATGCTTCAAGTTATTGGGGTTCCCCT | ||
| GGGGAGCATCTTCTTGGTTCTTGTAATGTTGCTGCCTCCCGATGGCTGCCCAGGGTTTCCAGCTCTCCCGTGCCCCTCGC | ||
| TTTTCTCTGAAAACTCGGCATGCCCCGGGGGGCCTCTTTGGAGCCTGTTGGAGGAGATTTTGTAGTAATGAGCATTTGGC | ||
| TTTTGTAATCCTTTTTCTGCTTCGTGCTAGCAGCCTCGCACTTCCCACCTGTTAAAGCTTGCAAAGATATCATCGGCAGG | ||
| CATTTTCCCAGGGGAAGCACAGTTGTGTCCAAAGCCCAGAATAATCCAGGCTTTCCTCATTTCTATGCAGAGGGCGTTAG | ||
| TTGATCCTGGTGCCCTCAAGAGAAGGTCCCTCCAGAACAAGCTCACCCTCCATCACAAGCACTGATGATGGGGGTGCTCA | ||
| AGCTGGGGCAGGGAGAGGCTGAGAGGGGATAACCCAAGGTGGCAGGAGGCTCCCTCGGTGGTTTGTGGTGGGGCTGTTCT | ||
| GTTCAGCCAGGATGTGGCCCTTTCAGGGGTTTACGCTGTTTAACACTGGCTGAGTGTCAGGACTGGGGGGCTATGGATGG | ||
| TGAGCTTCTCCCTGGAGCTGGCTGGTAGGGAAGTTCAGCAGCTCTCTGGATGTTATGAAACCACGGAGAGGCACAGTCAC | ||
| CTTAAAAGGACAGCAGCTCTCACTGGCTGCTAGACTGCCTCTGATGGAAGGTGTCTGCAAGACAAAGGAGAGGCTGCGGG | ||
| CAGCAGTGTGCGGGGGACAGGTGATCTTGGCCAGCATCCTGCTTGCTCATATTCCTCGGTGAGACCAGCTCTGCAGAGAA | ||
| AGGGCTGCTTCAGCCCTATTCACCCAAAACCTCAATGTAGAAACCACCCACTTTGCTCTCGTTCAGCTTCCAGAGGGAAT | ||
| GCTGTCAGTGACACAGCATTCTGGTCCCTGGAGTAGTGGGTTCTTGACATTAACGAATGGGCATTGTGATTTTATCCTTG | ||
| TGCCTTATGAACTTGGTTAAAGATTTGACAGTCACTGTCAGAGGCTGCAAGTCATGCAGGGGCTTCTGAGCCTGCAGGTG | ||
| AGGACCAGCCCAGACCAGGGTGAAGTCTCAGAGAGACTCTCCGTGGACCCTTCACCAAATGGCCTCCAAGGCAAGGCCCT | ||
| TGATCACAAGTGTGTCCCTGGTTCTCCCTGGTCCTCTCGCATCTGCCCCGTGACTCCCGACTCCCCTCTGCACTTGGTCT | ||
| GGTCTCCAAGATCGTTCTGATGTGGACTTTCCTCCTTGTCTATGCTGGCAGACCTCAGGAGGAATCCACCACCTCCGCTT | ||
| TGCTGCCAGGCCAATCACTGATAGCATCAAGCACACTGGCTTGAAGTCAGACTTCAGGTGTTCAAATACTGACTCCACCT | ||
| TCACTTACATCTGACTCGGGCAGTTATGTAACCTTCTGGCTTTGGGGTTTTTTTTGTTGTAAACAGGGACCCTAATGGCA | ||
| TCTGCCTCCCTGGAGTTGGAAGCTGGAACGGGGCAACACATGGACAATGCTGGGAACAGTGCCTCACACATGCCCGTACT | ||
| CAATGCTGTCATGGGACCCATTCCGGCCCTGTCTCCTACATTGCATCTCCATCTGTGATCTTTCACTCAGTGCCCCGGGG | ||
| TTGAGAACTAAACCCCTCTACTCATTCTCACAAGCAGGCCTTTTCCTCTTCAACCAGATTGTAACTCCCTGAGGGGAGGG | ||
| CTTGTTGTGTGTTTCCTTTGGATCTGCACAGTGGTACTTAGCAGCGTTCTAGGCACCTGGTAAGGGTTTGAGTAAAACAG | ||
| ACTGATTGGATAGTTAGTGATGCTGGGAATCTGGAGTGTGAATTAAGCAGTATATTCCAAATTACTTCCAGGCGTTCATC | ||
| ATTTCAGTATCACACGGCCACATGGGAAAATGCCCACTGTGTGAAATTTATTCATCAGTTCAACAAATATTTATCGAGTA | ||
| CTTTCCATGGCATGGTTTTGGTTCCTGAAGATTCAAAAATGAACAGACAGAAAATATCCACGCCCTTGTCACTTACCTGC | ||
| AGCAGACTGACAGTGGTCAGATACAATCTCAAGAGGTGATCAGTGCCACAGAGAAAATAGAGCAGGGTGTATTGGTTATC | ||
| TATCTCTGTGTAACAAATTATCCCCAAACATAGCAGTTTAAAACAATGCATATTTATTATCTGACCATTTCTGTGGGCTG | ||
| GGGCCAGGCATAGCTCTGCTGATCCTCCCACTCAGGGCTCCTTACAAGGCTACCGAAAAGGTGCTGGCCAGGGCCGTGGT | ||
| CATTGCAAGGTTCAACTGAGTCAAAATCCACTTCTAAACTCGATCATGGGGTTGTTGGGAGGATACAGTTTCTCATGAGC | ||
| TGTTGAACTAAGAGCTCAGGTTCCAGCTGTTTGGTGAATGCCATGTGGGCCTCTCCATGGAACACAACAGGAAAGCTTGC | ||
| TTCATCAGAGTGAGCAAGTGAGAAGAGCCAGAGAGAGTGAACACGCCAGGGACCTTGAGTCACCATCTTCCCAGTAAAGT | ||
| AAGTGCCATTAGGAACCCCACTTTACAGACGAAAATGGAGGCCCAGAGAGTTAAGTATTTTGGCCAAGGTTACATAACTA | ||
| TGTAACTAGTGAGTGGCAGGGCCGAGGTTTGATCCCAACCTGTTTGGCTCCAGTACTTGTGCTCCTAACTACCACAGTGG | ||
| ACCATTGCTCTGCCTTTTAGTTGCACACACTGTCTGCTGCAGTCTTCTTGACAAGAGAAGATGATGACTCAGGAACTTCA | ||
| GCAGTAGTGGGGATGGGAAGAAGTGGGTTGACTGGGAATACATTTTGAAGAGATTGTTGCTAGAACTTCTTGATAATTTG | ||
| GGTGTGGGAATAAGGTGAAAGAAAGATGTTAACAATGATCCCAAAGTTGGGTGCCTAAGAAACTGAGTGAATGACGGTGC | ||
| TATTCCTCAAGATAGAAGATGATGGTAGTGGAGCAGGTCTAGGGGGAGAATAAAGAGTTCTGTTTTGGCCACGTCAAGGG | ||
| TGATGTTCAGATGTAGATGTCAAGTGGCCCATTGAATACATATGTCTGGAGCTCAGGGGAGCAGTCAGACCAGAGATACA | ||
| GACTTTTGTAGTCATTAATCACGGATGACCACCGAGAGAAAGAGTATAAAGGAGAGAAAATGACTAAAGACTTAGACCCC | ||
| TGACACCTAAAACATTTAGCTGCCTGGACAAAAAGGGAGAGCCAGCAAAGGAAATGGAGACACAGGGGGCAAGAAAACCA | ||
| GGAAAGCATGGTGACCTGGAAGCCAGGTGAAGAGGGGCTTCCAAGAAGGAGGAAATGGTTAGCTGTGCCAAATGCTTGGT | ||
| GAGAGGGGATGGAGGACCAAATGGAAAAAGAAAGCTACAAAACTGTATTTTCAGAAATGTCCTAATTTTGCAAAAATAAT | ||
| TTCTCCCTGCCCAAAAAGAGTAAAAAGCTCTTTGAGTTTGTTAAATCTGTAGTCCAATTTTAATCCATGAACATGGTATA | ||
| TCTCTATTCTAGATATTTTAGAAGATATGTGGTAGGGGAGTGTGGGTTATGTTGTTTTCTATAAAAGGTGTTGAATTTTG | ||
| TTCTGGCAGGTCAGTTAATTACTGGCAGATCCTCTTGGTCTGGTCAGGCTTGGTTTGAATCTTTATTAGAGTTGGTCCAT | ||
| TTTTATTTTGCCCTTATTCCTAGGCTTTGGCCTTTCCTGTAGGGTATAGTCCTTGTTCCTAAGGCCTGGCCTTTTGGGGA | ||
| ACAAATGCCCAAGGTACTCAGCAAGGGTTCTCTCGTCTGGCTTGGCCAGAATTCAAAGCTCTGCCAGCTCTGCATGACTT | ||
| CTAGTATCTCTGCTTAGCTTTCAGTCTTATAACAGCTATGGAGTTTTGCCCTGCATGTGGGCAGTTCTGCCCTCAACCAA | ||
| GTACTCACAGGGTACCTCCAGGCAGACTTCTAGGGCCTACTTTCTGCACAAGATTCTTCTCTCCAGAGCCCAGACCTGTA | ||
| AGTTCTAGCTGCTTTAGCAGCCCCAAACTCTTGATTTTTGCCTTCTCCTATAATCTAGGCTGCTGTGCCCCATCGTCCTG | ||
| CATAATGGGCCAAAAGGCTGGGCAAACATGGGGCTTATCTTGTGTGTTTTTTTTCTGGCAGAACCACAGTCCTGAACTGC | ||
| CTGTTGTACAATCCCTACAAAGAGTAGCCTCAGATATTTTTGTCTAGTTTCATGATTGTTTACAGCAGGAGGGCAAATCC | ||
| AATCCTAGTCACTTCATTGTGGCAGGAATCAATATCTATTTGGTTTAATGTTTACCATTCCTTCCCATTCCCTATACCAG | ||
| CTCATCACCCTTGTCAGCGGCAGTTCTATATATGTTTGTAGTCCTTTCAGTTGAAATAAAATTGAGTCAAACAATTTATA | ||
| ATCTGAAATGAACAAAGACCATGTAAATTCTTTTCAGTTGCCTTTTTAGGCTGGTATCTGTCTGTAGAGGACTCCCAGGG | ||
| AAGGATTCTCAAGGAAGACTCAATGGGAAGCCTTTGGATGGCAAGCTACAGGGCTGAGTACGAGGGTGGCCTTCCTGTGC | ||
| GGGGTGTAGGATTAGCATCAGAGAAACAAATCAGGAATCCCTGGGTATAACAGTAGGGGCTGCATTGTCATTTTAGCCTT | ||
| CTCCAGAGATGCATGATCCACCCCCCACCCCGCAGGTCTTTTCCTCTCTATGAAAGTCACTGACAAGTTCCTGTGGATCC | ||
| CCTGGGGTCCCCAGGAATGTATTTCTACTCTGAGGGCCAGTGAGTATCTTTTTCTTGGCCATGAGCCATGAATAGAAACG | ||
| GGACCCTTAATACTGCCTGACCTGCCACATGCAGCCCTCTCTTCTGGGACTGTCTACACAAGTACATTTCCACCATCTAC | ||
| AGGGGCGGAATTCCGGTCATTTGCTACAGGGGAAATTCTAGATTTTTGTTTCTAAAGGGCCCCAGGTTACCAAGGTCTCT | ||
| TGTATATTAGAATTTTACCACTTCTCTCTGGGGGAATTAGGTATTTATCAATACATTTTGTAATATATATTTACCAAATT | ||
| GTTTATCCAGCAAACTTTTATTAAGCAAATGCCAGGCATTGTGTTAGGTTCTGAAGCTCTCCCAGTTCCTTATCCAGGGC | ||
| CCCAGGAACGCACTCAGGGACCATTTCAGACACGTGGGTGAGTCAGTCCCTAATGGGCTCAGAAGAGAATCACCAAAATG | ||
| TTTAAGACAGAACAGTCCCGAGCAGCCAACATTTCACCCTTCCTTCCTCTCTCTTCCCTTGCCGACCAGACCCAAGGGTT | ||
| TTGGACTCAACTGTTTCCTTTTGTAGCAATGAGCTAAGGAGGCTATTTGCTTTGACTAAGGGGCCAAGATGATGAAGTCA | ||
| GATGTCCTGAGTTTGCATCTTGCCTCTCCACTGACTTGCTGTGTGACCTTAAGCAAGTACCTTCCCCTCTCTAGGTCTGC | ||
| TTCCTGAAAATTCAAAGTCTCTGAAAATTCTGTTTTAAAATATGTGCTGGAGGTGGGGAGACCTGATTCCCTGCCTAGTG | ||
| CTTCCTTCGTTTTCATGGATTCTTTATTAAGCAGATATTACTTCTTCATAATAAAATCGTATATGAAACAATGACTTGAT | ||
| TTCTTTATATGAAACATACTTTGTACATCTAAAAATGTTGTTGAAATCATCTGAGCCTCTGAGCAAGAGCTTCGCCTTTG | ||
| ACTCTGAAGCCAGTGCTGTCAGCAGTTTCTCCCCCTTAATGTAATGCTGTATGTGACTCAATATGAACTAAGCAGGGGGT | ||
| GGGAGGTACAGACCACCCCAGTAATCCAGGCTTTCTCTGGAATTCTCCCACTTGTTTATAGTCTGGGCAATTTGCCTCCT | ||
| GCTGCTGCATGACTCAGACTCGGAGAGCTTCCAACCTCGCAATGAGCCAGCGGCTCCCCGGAGTCAGACGCTGGCCCTTG | ||
| TGTCTCAGGCTCCTGGAACCTTCCGATTAAGCCTCCACTTCCATCTCCTCCCTGGCCACATTCAGGCAGCAATGCCCCAA | ||
| CCCCACACAGAGACACACGCCCAATCAGTGCCCTGTACAAGCAGGGACTGTGGGTGAGAGGGTACAAGGAGGTGTTCCAA | ||
| CCCCTCACTGAGACAGGATTTCTAGCCCCTCTCTTTGGTTTGTGTCATTTTGCTTTGAAATGTAAGTTGACTTCTGATCA | ||
| GGGCAGATCTCAGTTTTATAGGACCTTGTGTAAGAATAAGCAATACAAAATAAGGAACACAAAATGAGACCTAGAGTCTT | ||
| AGAAGGGGCCCGTGCAACCAGAGGTGCCCCGAAAGCTTAAGTGTCATTGACTTCCTAGCAACCCTGACTGTGGTCTGATT | ||
| CCTTTAAGATCCAGAACAACTGCTCCCTGTACCTTAAGTAATTATCATTTAGAATAAAGTCAGAAAATTGCTTGCTGTCT | ||
| GTTTATTTTAGAATCAAGCAGCTTCTGTATAATTTGAATTTGAGATAGCATTCTTAAAAAAAAATTCCCTTCGCAATAAA | ||
| GCACCAGATTGAATGTCCGATGAGTCACAAATGCCCTTCTGAAAACAGCTGCATTAGAGGGACTCACTCAGAAAACATGA | ||
| TTTTCCTTCCTCCAAGGGTCTCCCCTAGACCCTGGCACAGAATCACCCTGGTCCCCACTCTGGTCCTCCCTTCCAGGCTC | ||
| ATTCCTGGTGCAGCAGATCACTTCCACATTTACTGCATCACATCCAGCATCAATGTTTTTAACTCCATGAATTGTTTAGA | ||
| AAATTGTATAGAGGCCAGGCGCAGTGGCTCACGCCTGTAATCCCCATACTTTGGGAGGCCAAGGCAGGCGGATCACCTGA | ||
| GGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGTCAGGCCTGGT | ||
| GGTAGGCATCTGTAACCCCAGCTATTCGGGAGGCTGAGGTAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGA | ||
| GCCAAGATGGTGCCACTGCACTCCAGCCTGGACAACAAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAATTGTATAGATA | ||
| TTGATTAAAGCAGAACCCTGAAAGATGGTGAATGATTGGCAGGCAATGAGAGGAAGTGTCGTGTTGTCCGTTGGTGACAT | ||
| TTGCAAACTCTCCTGGTTTAAAGTGATTCCAGAGCAACTTTATTTCCATAGTCTGTGTTGCACTCAAAGTAAATATTAAT | ||
| TCCATTATGCCATAAACTTTTATTTATCATGACAGCAAGTCATAAAGTTCTCTTACTAGAATATAGCTTCTAAATTGCAT | ||
| ATCATAGATGAGATACAACACACACATTGGATTCTAGCAGCAATTACCCACCATCCTTTATGCAAGTCGGTATTAAATGC | ||
| ACTTTCTAAATATGAGTCACAGTCTGAGCTTATGCAGAAAATCTTCCATGGCTATTACCCAGGAGCCCAGAAATATGACG | ||
| TGAGGGTGACAGAGGAGCCACAGCCAGCAGGGGCCAGACACAAGGATCAAAGTGCACCTAGTCACCCGGCAGTAATTCAT | ||
| CTGAAGCATTCTTTGCATATTATGGGTCTGACTTTTTAAATTACGTAAATTGCTCATTAGAAGTGCCTTGTAATTGCCTT | ||
| CACCTGCGGTATTGCGAGAGGTGTAGATTTTAATTATTCTTTTTTGATTTGTAATGTGGTTTGACTTTTTCAGGGTGATA | ||
| GTTTGGAAAAATACAGATCTGCTCTAATTGTTGTACCAAGTGAAAATAGATGGCTCTGTTGATCAACTTCCTTGACTTTG | ||
| TGGTGGAGCGTACAAAGGAGTCTTATAGTTTCCCAGCCCTTGTTGATGACTGAGGGGCTTTGCCCGTGGGGCCCGGGGAG | ||
| GATCCCTGTGAGCCTGTAGTGCTGGTGCCTTGGGCTCAGCCAGCCCCTCAGATGACTTGTGTGGAGCCAGGCAGTGTGTT | ||
| CATGTTGGATGTAACCAGATCTCGGGGGAGTCTGCTCACCTCTTCCCCACAGCATGGATAGGACAGAAAAAGCCAAGGCC | ||
| CATTCATCATCTTTGAAGACTGGGACAGACATGATGAGTGCTGGGGGCGCCCAGGTCCGGGGTGCTCCTGGGATGCCTGC | ||
| TGCAGAGATGCTTTTCTCTCTAGCCCACTTCTCGAGGGCAGCCTGGCCTCCTGCTACCCAGCAAGTGCTCTCACTTCCTG | ||
| CAGCACAGAGGCCTCCACCTGTCCAGCCCACCCTGAGCCAAGCTGCTCTGGGCTCTGGAACGGGCTGCAGGCTTTCTCGG | ||
| GCCCCTGGGCCTGGCCCCCTGTCATCCAGCACACGGAATTGATGAGTTGTGAGACCAGAGCTGTGGCTTCGGGGGTAAAC | ||
| TTCCAGGACTCGTTCTGGCTCATCTGCAGCCATGGATGAATAAAAACTCGATCAGGACG |
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"The
sample.fastais extracted from chr1:7291263-7302041 of the hg38 human genome assembly."This could be confusing, since the cpgIsland and refGen files are for hg19. Also the name "sample" suggests something specific to the reads being aligned. I might rename it to something like "RefGenSubset_hg19.fasta
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The fasta file is just example data and it that case the naming is not really relevant, only the content and the extension are important.
I do not really see the need to change the sample data, as it is only used by us developers and works as expected.
We could, however, highlight in the documentation that the user should use only data from the same assembly.