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  1. theislab/ncem theislab/ncem Public

    Learning cell communication from spatial graphs of cells

    Python 102 13

  2. theislab/single-cell-best-practices theislab/single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 777 183

  3. scverse/squidpy scverse/squidpy Public

    Spatial Single Cell Analysis in Python

    Python 440 81

  4. theislab/spatial_scog_workshop_2022 theislab/spatial_scog_workshop_2022 Public

    Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022

    Jupyter Notebook 50 27

  5. theislab/nicheformer theislab/nicheformer Public

    Repository for Nicheformer: a foundation model for single-cell and spatial omics

    Jupyter Notebook 63 2