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Convert to rCRS mitochondria, load by accession, circular mito support
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@matstrand matstrand released this 28 Oct 22:44
· 23 commits to master since this release
0.3.0
a29d6cc

The SeqSeek 0.3.0 release adds documentation for undocumented features added in 0.2.x releases.

The main changes are:

  • Chromosome MT now loads the rCRS mitochondrial sequence instead of the outdated RSRS sequence. See the readme for how the inserted N base is handled and removed.
  • Support for loading by accession (e.g. Chromosome('NC_001807.4') if you want the outdated RSRS sequence
  • Support for the circular nature of the mitochondria with the loop keyword argument (e.g. Chromosome('MT', loop=True))
  • Newlines are now removed from FASTA files as a post-processing step of the seqseek downloader instead of in advance by seqseek maintainers.
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