From 6f6a3d8ec08cc07b7914855f54a1675b31ead95f Mon Sep 17 00:00:00 2001 From: Fabian Zills <46721498+PythonFZ@users.noreply.github.com> Date: Sat, 16 Sep 2023 16:45:16 +0200 Subject: [PATCH] release v0.2.1 preperation (#212) * bump version * pass json data * CI setup * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add coverage --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- .github/workflows/test.yaml | 43 +++++++++++ poetry.lock | 139 +++++++++++++++++++++++++++++++++++- pyproject.toml | 4 +- zndraw/app.py | 6 +- 4 files changed, 189 insertions(+), 3 deletions(-) create mode 100644 .github/workflows/test.yaml diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml new file mode 100644 index 00000000..a050a4c3 --- /dev/null +++ b/.github/workflows/test.yaml @@ -0,0 +1,43 @@ +name: tests + +on: + push: + branches: [main] + pull_request: + schedule: + - cron: "14 3 * * 1" # at 03:14 on Monday. + +jobs: + pytest: + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + python-version: + - "3.11" + - "3.10" + - 3.9 + os: + - ubuntu-latest + + steps: + - uses: actions/checkout@v2 + - name: Install Poetry + run: | + pipx install poetry + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v3 + with: + python-version: ${{ matrix.python-version }} + cache: "poetry" + - name: Install package + run: | + poetry install --no-interaction + - name: Pytest + run: | + poetry run coverage run -m pytest -vv + poetry run coverage xml + - name: Upload coverage reports to Codecov + uses: codecov/codecov-action@v3 + env: + CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} diff --git a/poetry.lock b/poetry.lock index c9b67930..436bdd2d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -279,6 +279,70 @@ mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.2.0)", "types-Pill test = ["Pillow", "contourpy[test-no-images]", 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"Apache-2.0" @@ -24,6 +24,8 @@ pandas = "^2.0.3" [tool.poetry.group.dev.dependencies] pre-commit = "^3.3.3" +pytest = "^7.4.2" +coverage = "^7.3.1" [build-system] requires = ["poetry-core"] diff --git a/zndraw/app.py b/zndraw/app.py index 6e06daef..30dd139c 100644 --- a/zndraw/app.py +++ b/zndraw/app.py @@ -131,7 +131,11 @@ def modifier_run(data): # modifier = available_methods[data["name"]](**data["params"]) print(f"modifier:run {modifier = }") atoms_list = modifier.run( - atom_ids=data["selection"], atoms=atoms, points=points, segments=segments + atom_ids=data["selection"], + atoms=atoms, + points=points, + segments=segments, + json_data=data["atoms"] if "atoms" in data else None, ) io.emit("atoms:clear", int(data["step"]) + 1) for idx, atoms in tqdm.tqdm(enumerate(atoms_list)):