diff --git a/deepspace/Dockerfile b/deepspace/Dockerfile index bcb4356..fc71b1b 100755 --- a/deepspace/Dockerfile +++ b/deepspace/Dockerfile @@ -2,6 +2,7 @@ FROM rocker/geospatial:latest MAINTAINER "Miao Yu" yufreecas@gmail.com RUN apt-get update \ + && R -e "BiocManager::install(c('duckdb','RNetCDF','Cardinal','CardinalWorkflows','RNiftyReg','ClusterR','purrr','imager','umap','Rtsne','Matrix','igraph','tidygraph','ggraph','reshape2','dbscan','MALDIquantForeign','fpc','future','patchwork','ggridges','pheatmap','distances','ropls'))" \ && installGithub.r \ yufree/rmwf \ yufree/enviGCMS \ @@ -9,7 +10,6 @@ RUN apt-get update \ nhpatterson/RegCombIMS \ michalsta/opentims/opentimsr \ yufree/HiTMaP \ - && R -e "BiocManager::install(c('duckdb','RNetCDF','Cardinal','CardinalWorkflows','RNiftyReg','ClusterR','purrr','imager','umap','Rtsne','Matrix','igraph','tidygraph','ggraph','reshape2','dbscan','MALDIquantForeign','fpc','future','patchwork','ggridges','pheatmap','distances','ropls'))" \ && R -e "devtools::install_url('https://github.com/yufree/SimpleITKRInstaller/releases/download/v2.3.0/SimpleITK_2.3.0_R_x86_64-pc-linux-gnu.tar.gz',build=F)" \ && rm -rf /tmp/downloaded_packages \ && rm -rf /var/lib/apt/lists/*