From b5e17d8bfdb1c74f205289b28e3f158fcf8d4c96 Mon Sep 17 00:00:00 2001 From: Jeremy Muhlich Date: Thu, 21 Mar 2024 10:20:00 -0400 Subject: [PATCH 1/2] Add bioformats support for file loading --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 2752223..401c155 100644 --- a/Dockerfile +++ b/Dockerfile @@ -12,7 +12,7 @@ ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin: # Installing necessary packages # Installing basicpy and other pip packages -RUN pip --no-cache-dir install git+https://github.com/peng-lab/BaSiCpy@dev +RUN pip --no-cache-dir install git+https://github.com/peng-lab/BaSiCpy@dev bioformats_jar # Copy script and test run COPY ./main.py /opt/ From 94a2b00e7d2d47cce8261017786485139651a1d6 Mon Sep 17 00:00:00 2001 From: Yohsuke Fukai Date: Fri, 22 Mar 2024 17:28:10 +0900 Subject: [PATCH 2/2] updated cosign in workflow --- .github/workflows/docker-publish.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/docker-publish.yml b/.github/workflows/docker-publish.yml index fb86ad3..8cb0231 100644 --- a/.github/workflows/docker-publish.yml +++ b/.github/workflows/docker-publish.yml @@ -37,9 +37,9 @@ jobs: # Install the cosign tool except on PR # https://github.com/sigstore/cosign-installer - name: Install Cosign - uses: sigstore/cosign-installer@v3.1.1 + uses: sigstore/cosign-installer@v3.3.0 with: - cosign-release: 'v2.2.1' + cosign-release: 'v2.2.2' # Workaround: https://github.com/docker/build-push-action/issues/461 - name: Setup Docker buildx