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profile.to_widgets() doesn't work #1609

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jmakov opened this issue Jun 18, 2024 · 1 comment
Open
3 tasks done

profile.to_widgets() doesn't work #1609

jmakov opened this issue Jun 18, 2024 · 1 comment
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@jmakov
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jmakov commented Jun 18, 2024

Current Behaviour

When calling .to_widgets() in jupyter lab, it stops at Render widgets: 0% and a warning:

IOPub message rate exceeded.
The Jupyter server will temporarily stop sending output
to the client in order to avoid crashing it.
To change this limit, set the config variable
`--ServerApp.iopub_msg_rate_limit`.

Current values:
ServerApp.iopub_msg_rate_limit=1000.0 (msgs/sec)
ServerApp.rate_limit_window=3.0 (secs)

Works as expected if jupyter lab is started with jupyter lab --ServerApp.iopub_msg_rate_limit=5000

Expected Behaviour

According to https://docs.profiling.ydata.ai/4.6/getting-started/quickstart/ it should create a widget.

Data Description

df = polars_lf.sample(50_000, seed=42).to_pandas(), 300 columns of numerical (f32) and int data

Code that reproduces the bug

profile.to_widgets()

pandas-profiling version

v4.6.0

Dependencies

```Text # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_kmp_llvm conda-forge _py-xgboost-mutex 2.0 gpu_0 conda-forge abseil-cpp 20211102.0 h93e1e8c_3 conda-forge absl-py 2.1.0 pyhd8ed1ab_0 conda-forge accelerate 0.16.0 pyhd8ed1ab_0 conda-forge aiohttp 3.9.5 py39hd1e30aa_0 conda-forge aiohttp-cors 0.7.0 py_0 conda-forge aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge antlr-python-runtime 4.9.3 pyhd8ed1ab_1 conda-forge anyio 4.4.0 pyhd8ed1ab_0 conda-forge aom 3.5.0 h27087fc_0 conda-forge apache-arrow-proc 4.0.0 cuda conda-forge argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py39hd1e30aa_4 conda-forge arrow 1.3.0 pyhd8ed1ab_0 conda-forge arrow-cpp 7.0.0 py39h92a4ddb_9_cuda conda-forge arrow-cpp-proc 4.0.0 cuda conda-forge astroid 3.2.2 py39hf3d152e_0 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge async-lru 2.0.4 pyhd8ed1ab_0 conda-forge async-timeout 4.0.3 pyhd8ed1ab_0 conda-forge atk-1.0 2.38.0 h04ea711_2 conda-forge attrs 23.2.0 pyh71513ae_0 conda-forge autogluon 0.8.2 pyhd8ed1ab_4 conda-forge autogluon.common 0.8.2 pyhd8ed1ab_4 conda-forge autogluon.core 0.8.2 light_py39h3f8926a_5 conda-forge autogluon.features 0.8.2 pyhd8ed1ab_2 conda-forge autogluon.multimodal 0.8.2 pyha770c72_0 conda-forge autogluon.tabular 0.8.2 pyha770c72_0 conda-forge autogluon.timeseries 0.8.2 pyhd8ed1ab_0 conda-forge autopep8 2.0.4 pyhd8ed1ab_0 conda-forge aws-c-cal 0.5.11 h95a6274_0 conda-forge aws-c-common 0.6.2 h7f98852_0 conda-forge aws-c-event-stream 0.2.7 h3541f99_13 conda-forge aws-c-io 0.10.5 hfb6a706_0 conda-forge aws-checksums 0.1.11 ha31a3da_7 conda-forge aws-sdk-cpp 1.8.186 hecaee15_4 conda-forge babel 2.14.0 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge binaryornot 0.4.4 py_1 conda-forge binutils 2.40 h4852527_7 conda-forge binutils_impl_linux-64 2.40 ha1999f0_7 conda-forge binutils_linux-64 2.40 hb3c18ed_7 conda-forge bleach 6.1.0 pyhd8ed1ab_0 conda-forge blessed 1.19.1 pyhe4f9e05_2 conda-forge blinker 1.8.2 pyhd8ed1ab_0 conda-forge blosc 1.21.5 h0f2a231_0 conda-forge bokeh 3.4.1 pyhd8ed1ab_0 conda-forge boto3 1.34.127 pyhd8ed1ab_0 conda-forge botocore 1.34.127 pyge38_1234567_0 conda-forge brotli 1.0.9 h166bdaf_9 conda-forge brotli-bin 1.0.9 h166bdaf_9 conda-forge brotli-python 1.0.9 py39h5a03fae_9 conda-forge brunsli 0.1 h9c3ff4c_0 conda-forge bzip2 1.0.8 hd590300_5 conda-forge c-ares 1.28.1 hd590300_0 conda-forge c-blosc2 2.12.0 hb4ffafa_0 conda-forge c-compiler 1.7.0 hd590300_1 conda-forge ca-certificates 2024.6.2 hbcca054_0 conda-forge cached-property 1.5.2 hd8ed1ab_1 conda-forge cached_property 1.5.2 pyha770c72_1 conda-forge cachetools 5.3.3 pyhd8ed1ab_0 conda-forge cairo 1.16.0 ha61ee94_1014 conda-forge catalogue 1.0.0 py39hf3d152e_3 conda-forge catboost 1.1.1 py39hf3d152e_2 conda-forge category_encoders 2.6.3 pyhd8ed1ab_0 conda-forge certifi 2024.6.2 pyhd8ed1ab_0 conda-forge cffi 1.16.0 py39h7a31438_0 conda-forge cfitsio 4.2.0 hd9d235c_0 conda-forge chardet 5.2.0 py39hf3d152e_1 conda-forge charls 2.4.2 h59595ed_0 conda-forge charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge click 8.1.7 unix_pyh707e725_0 conda-forge cloudpickle 3.0.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge colorcet 3.1.0 py_0 pyviz colorful 0.5.6 pyhd8ed1ab_0 conda-forge comm 0.2.2 pyhd8ed1ab_0 conda-forge connectorx 0.3.1 py39h87ee89f_0 conda-forge contourpy 1.2.1 py39h7633fee_0 conda-forge cookiecutter 2.6.0 pyhca7485f_0 conda-forge cryptography 39.0.0 py39hd598818_0 conda-forge cuda 12.4.1 ha804496_0 conda-forge cuda-cccl 12.4.127 0 nvidia cuda-command-line-tools 12.4.1 0 nvidia cuda-compiler 12.4.1 hbad6d8a_0 conda-forge cuda-cudart 12.4.127 0 nvidia cuda-cudart-dev 12.4.127 0 nvidia cuda-cuobjdump 12.4.127 0 nvidia cuda-cupti 12.4.127 0 nvidia cuda-cuxxfilt 12.4.127 0 nvidia cuda-driver-dev 12.4.127 0 nvidia cuda-gdb 12.4.127 0 nvidia cuda-libraries 12.4.1 ha770c72_1 conda-forge cuda-libraries-dev 12.4.1 ha770c72_1 conda-forge cuda-nsight 12.4.127 0 nvidia cuda-nvcc 12.4.131 0 nvidia cuda-nvdisasm 12.4.127 0 nvidia cuda-nvml-dev 12.4.127 0 nvidia cuda-nvprof 12.4.127 0 nvidia cuda-nvprune 12.4.127 0 nvidia cuda-nvrtc 12.4.127 0 nvidia cuda-nvrtc-dev 12.4.127 0 nvidia cuda-nvtx 12.4.127 0 nvidia cuda-nvvp 12.4.127 0 nvidia cuda-opencl 12.4.127 0 nvidia cuda-opencl-dev 12.4.127 0 nvidia cuda-profiler-api 12.4.127 0 nvidia cuda-python 11.7.0 py39h5a03fae_0 conda-forge cuda-runtime 12.4.1 ha804496_0 conda-forge cuda-sanitizer-api 12.4.127 0 nvidia cuda-toolkit 12.4.1 ha804496_0 conda-forge cuda-tools 12.4.1 ha770c72_1 conda-forge cuda-version 11.8 h70ddcb2_3 conda-forge cuda-visual-tools 12.4.1 ha770c72_1 conda-forge cudatoolkit 11.8.0 h4ba93d1_13 conda-forge cudf 22.06.01 cuda_11_py39_g0dab0f8305_0 rapidsai cudnn 8.9.7.29 hbc23b4c_3 conda-forge cupy 10.6.0 py39hc3c280e_0 conda-forge cxx-compiler 1.7.0 h00ab1b0_1 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge cymem 2.0.8 py39h3d6467e_1 conda-forge cython-blis 0.7.10 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ipython 8.18.1 pyh707e725_3 conda-forge ipywidgets 8.1.3 pyhd8ed1ab_0 conda-forge isoduration 20.11.0 pyhd8ed1ab_0 conda-forge isort 5.13.2 pyhd8ed1ab_0 conda-forge jedi 0.19.1 pyhd8ed1ab_0 conda-forge jinja2 3.1.4 pyhd8ed1ab_0 conda-forge jmespath 1.0.1 pyhd8ed1ab_0 conda-forge joblib 1.4.2 pyhd8ed1ab_0 conda-forge jpeg 9e h0b41bf4_3 conda-forge json5 0.9.25 pyhd8ed1ab_0 conda-forge jsonpointer 3.0.0 py39hf3d152e_0 conda-forge jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge jsonschema-with-format-nongpl 4.17.3 pyhd8ed1ab_0 conda-forge jupyter 1.0.0 pyhd8ed1ab_10 conda-forge jupyter-lsp 2.2.5 pyhd8ed1ab_0 conda-forge jupyter-resource-usage 1.0.2 pyhd8ed1ab_0 conda-forge jupyter_bokeh 4.0.5 pyhd8ed1ab_0 conda-forge jupyter_client 8.6.2 pyhd8ed1ab_0 conda-forge jupyter_console 6.6.3 pyhd8ed1ab_0 conda-forge jupyter_core 5.7.2 py39hf3d152e_0 conda-forge jupyter_events 0.6.3 pyhd8ed1ab_1 conda-forge jupyter_server 2.10.0 pyhd8ed1ab_0 conda-forge jupyter_server_terminals 0.5.3 pyhd8ed1ab_0 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libbrotlidec 1.0.9 h166bdaf_9 conda-forge libbrotlienc 1.0.9 h166bdaf_9 conda-forge libcblas 3.9.0 20_linux64_openblas conda-forge libcrc32c 1.1.2 h9c3ff4c_0 conda-forge libcublas 12.4.5.8 0 nvidia libcublas-dev 12.4.5.8 0 nvidia libcudf 22.06.01 cuda11_g0dab0f8305_0 rapidsai libcufft 11.2.1.3 0 nvidia libcufft-dev 11.2.1.3 0 nvidia libcufile 1.9.1.3 0 nvidia libcufile-dev 1.9.1.3 0 nvidia libcurand 10.3.5.147 0 nvidia libcurand-dev 10.3.5.147 0 nvidia libcurl 7.87.0 h6312ad2_0 conda-forge libcusolver 11.6.1.9 0 nvidia libcusolver-dev 11.6.1.9 0 nvidia libcusparse 12.3.1.170 0 nvidia libcusparse-dev 12.3.1.170 0 nvidia libdeflate 1.17 h0b41bf4_0 conda-forge libedit 3.1.20191231 he28a2e2_2 conda-forge libev 4.33 hd590300_2 conda-forge libevent 2.1.10 h9b69904_4 conda-forge libexpat 2.6.2 h59595ed_0 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-devel_linux-64 12.3.0 h6b66f73_110 conda-forge libgcc-ng 13.2.0 h77fa898_10 conda-forge libgd 2.3.3 h5aea950_4 conda-forge libgettextpo 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libsodium 1.0.18 h36c2ea0_1 conda-forge libsqlite 3.46.0 hde9e2c9_0 conda-forge libssh2 1.10.0 haa6b8db_3 conda-forge libstdcxx-devel_linux-64 12.3.0 h6b66f73_110 conda-forge libstdcxx-ng 13.2.0 hc0a3c3a_10 conda-forge libthrift 0.16.0 h491838f_2 conda-forge libtiff 4.5.0 h6adf6a1_2 conda-forge libtool 2.4.7 h27087fc_0 conda-forge libunwind 1.6.2 h9c3ff4c_0 conda-forge libutf8proc 2.8.0 h166bdaf_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libuv 1.44.2 hd590300_1 conda-forge libwebp 1.2.4 h1daa5a0_1 conda-forge libwebp-base 1.2.4 h166bdaf_0 conda-forge libxcb 1.13 h7f98852_1004 conda-forge libxgboost 1.7.6 cuda118_hd3b444d_6 conda-forge libxml2 2.10.3 hca2bb57_4 conda-forge libzlib 1.2.13 h4ab18f5_6 conda-forge libzopfli 1.0.3 h9c3ff4c_0 conda-forge lightgbm 3.3.5 py39h227be39_0 conda-forge lightning-utilities 0.11.2 pyhd8ed1ab_0 conda-forge linkify-it-py 2.0.3 pyhd8ed1ab_0 conda-forge llvm-openmp 18.1.7 ha31de31_0 conda-forge llvmlite 0.41.1 py39he1b5a44_0 numba locket 1.0.0 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python-xxhash 3.4.1 py39hd1e30aa_0 conda-forge python_abi 3.9 4_cp39 conda-forge pytoolconfig 1.2.5 pyhd8ed1ab_0 conda-forge pytorch 1.12.1 cuda112py39ha0cca9b_200 conda-forge pytorch-lightning 1.9.4 pyhd8ed1ab_1 conda-forge pytorch-metric-learning 1.7.3 pyhd8ed1ab_0 conda-forge pytz 2024.1 pyhd8ed1ab_0 conda-forge pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge pyviz_comms 3.0.0 py_0 pyviz pywavelets 1.4.1 py39h44dd56e_1 conda-forge pyyaml 6.0.1 py39hd1e30aa_1 conda-forge pyzmq 26.0.3 py39ha1047a2_0 conda-forge qtconsole-base 5.5.2 pyha770c72_0 conda-forge qtpy 2.4.1 pyhd8ed1ab_0 conda-forge quantlab 0.1.10 pypi_0 pypi ray-core 2.3.0 py39h4d85f9a_0 conda-forge ray-dashboard 2.3.0 py39h9a2ef2b_0 conda-forge ray-default 2.3.0 py39hf3d152e_0 conda-forge ray-tune 2.3.0 py39hf3d152e_0 conda-forge re2 2022.04.01 h27087fc_0 conda-forge readline 8.2 h8228510_1 conda-forge regex 2024.5.15 py39hd3abc70_0 conda-forge requests 2.32.3 pyhd8ed1ab_0 conda-forge requests-oauthlib 2.0.0 pyhd8ed1ab_0 conda-forge 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pyhd8ed1ab_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge sleef 3.5.1 h9b69904_2 conda-forge smart_open 7.0.4 pyhd8ed1ab_0 conda-forge snappy 1.1.10 hdb0a2a9_1 conda-forge sniffio 1.3.1 pyhd8ed1ab_0 conda-forge snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge soupsieve 2.5 pyhd8ed1ab_1 conda-forge spacy 2.3.7 py39h5472131_0 conda-forge spdlog 1.8.5 h4bd325d_1 conda-forge srsly 1.0.5 py39he80948d_0 conda-forge stack_data 0.6.2 pyhd8ed1ab_0 conda-forge statsforecast 1.4.0 pyhd8ed1ab_0 conda-forge statsmodels 0.14.2 py39hd92a3bb_0 conda-forge sysroot_linux-64 2.12 he073ed8_17 conda-forge tabulate 0.9.0 pyhd8ed1ab_1 conda-forge tangled-up-in-unicode 0.2.0 pyhd8ed1ab_0 conda-forge tbb 2021.9.0 hf52228f_0 conda-forge tblib 3.0.0 pyhd8ed1ab_0 conda-forge tenacity 8.3.0 pyhd8ed1ab_0 conda-forge tensorboard 2.11.2 pyhd8ed1ab_0 conda-forge tensorboard-data-server 0.6.1 py39hd97740a_4 conda-forge tensorboard-plugin-wit 1.8.1 pyhd8ed1ab_0 conda-forge tensorboardx 2.6.2.2 pyhd8ed1ab_0 conda-forge terminado 0.18.1 pyh0d859eb_0 conda-forge text-unidecode 1.3 pyhd8ed1ab_1 conda-forge thinc 7.4.5 py39h5472131_2 conda-forge threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge tifffile 2023.8.12 pyhd8ed1ab_0 conda-forge timm 0.9.16 pyhd8ed1ab_0 conda-forge tinycss2 1.3.0 pyhd8ed1ab_0 conda-forge tk 8.6.13 noxft_h4845f30_101 conda-forge tokenizers 0.13.2 py39h01ec81f_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge tomlkit 0.12.5 pyha770c72_0 conda-forge toolz 0.12.1 pyhd8ed1ab_0 conda-forge torchmetrics 0.11.0 pyhd8ed1ab_0 conda-forge torchvision 0.13.0 cuda112py39hd2c45b6_0 conda-forge tornado 6.4.1 py39hd3abc70_0 conda-forge tqdm 4.66.4 pyhd8ed1ab_0 conda-forge traitlets 5.14.3 pyhd8ed1ab_0 conda-forge transformers 4.26.1 pyhd8ed1ab_0 conda-forge typeguard 4.3.0 pyhd8ed1ab_0 conda-forge types-python-dateutil 2.9.0.20240316 pyhd8ed1ab_0 conda-forge typing-extensions 4.12.2 hd8ed1ab_0 conda-forge typing_extensions 4.12.2 pyha770c72_0 conda-forge typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge typish 1.9.3 pyhd8ed1ab_0 conda-forge tzdata 2024a h0c530f3_0 conda-forge uc-micro-py 1.0.3 pyhd8ed1ab_0 conda-forge ujson 5.10.0 py39h84cc369_0 conda-forge unicodedata2 15.1.0 py39hd1e30aa_0 conda-forge unixodbc 2.3.12 h661eb56_0 conda-forge uri-template 1.3.0 pyhd8ed1ab_0 conda-forge urllib3 1.26.18 pyhd8ed1ab_0 conda-forge virtualenv 20.26.2 pyhd8ed1ab_0 conda-forge visions 0.7.5 pyhd8ed1ab_0 conda-forge wasabi 0.10.1 pyhd8ed1ab_1 conda-forge wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge webcolors 24.6.0 pyhd8ed1ab_0 conda-forge webencodings 0.5.1 pyhd8ed1ab_2 conda-forge websocket-client 1.8.0 pyhd8ed1ab_0 conda-forge werkzeug 3.0.3 pyhd8ed1ab_0 conda-forge whatthepatch 1.0.5 pyhd8ed1ab_0 conda-forge wheel 0.43.0 pyhd8ed1ab_1 conda-forge widgetsnbextension 4.0.11 pyhd8ed1ab_0 conda-forge window-ops 0.0.15 pyhd8ed1ab_0 conda-forge wordcloud 1.9.3 py39hd1e30aa_1 conda-forge wrapt 1.16.0 py39hd1e30aa_0 conda-forge xarray 2023.12.0 pyhd8ed1ab_0 conda-forge xgboost 1.7.6 cuda118_py39h40095f8_6 conda-forge xlrd 2.0.1 pyhd8ed1ab_3 conda-forge xorg-kbproto 1.0.7 h7f98852_1002 conda-forge xorg-libice 1.1.1 hd590300_0 conda-forge xorg-libsm 1.2.4 h7391055_0 conda-forge xorg-libx11 1.8.4 h0b41bf4_0 conda-forge xorg-libxau 1.0.11 hd590300_0 conda-forge xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge xorg-libxext 1.3.4 h0b41bf4_2 conda-forge xorg-libxrender 0.9.10 h7f98852_1003 conda-forge xorg-renderproto 0.11.1 h7f98852_1002 conda-forge xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge xorg-xproto 7.0.31 h7f98852_1007 conda-forge xxhash 0.8.2 hd590300_0 conda-forge xyzservices 2024.6.0 pyhd8ed1ab_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge yapf 0.40.1 pyhd8ed1ab_0 conda-forge yarl 1.9.4 py39hd1e30aa_0 conda-forge ydata-profiling 4.6.0 pyhd8ed1ab_0 conda-forge zeromq 4.3.5 h59595ed_1 conda-forge zfp 1.0.1 h59595ed_0 conda-forge zict 3.0.0 pyhd8ed1ab_0 conda-forge zipp 3.19.2 pyhd8ed1ab_0 conda-forge zlib 1.2.13 h4ab18f5_6 conda-forge zlib-ng 2.0.7 h0b41bf4_0 conda-forge zstd 1.5.6 ha6fb4c9_0 conda-forge ```

OS

Manjaro 24.0.2

Checklist

  • There is not yet another bug report for this issue in the issue tracker
  • The problem is reproducible from this bug report. This guide can help to craft a minimal bug report.
  • The issue has not been resolved by the entries listed under Common Issues.
@fabclmnt
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fabclmnt commented Jul 9, 2024

Hi @jmakov ,

this is not related with ydata-profiling, but rather with your setting. As you've stated by upgrading your IO pub limit and message limit rate it works.

Works as expected if jupyter lab is started with jupyter lab --ServerApp.iopub_msg_rate_limit=5000

Perhaps you've not given all the details required for our team to trace it back to the package. But based on the information provided so far seems not to be specific to ydata-profiling.

@fabclmnt fabclmnt added question/discussion ❓ Open dicussion and removed needs-triage labels Jul 9, 2024
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