Installation failed #29

Suharyana61 · 2023-04-01T08:03:25Z

Suharyana61
Apr 1, 2023

Hi,
My name is Suharyana from Physics Dept. Sebelas Maret University Indonesia. I'm very interested in these software and I tried to install them.
I'm using the latest linux mint version. When installed anaconda3 I used Sam Dotson's script ubuntu-post-installer .

I followed all instructions. However failed.

When I tried to install the openmc, I've got message

ERROR: Permission to yardasol/openmc.git denied to Suharyana61.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

I tried again by adding --clean

(base) shry@shry3-X450EA:~/ubuntu-nuclear-software-installer$ bash ubuntu-nuclear-software-installer.bash openmc --clean
Installing openmc
Already on 'develop'
Your branch is ahead of 'origin/develop' by 788 commits.
(use "git push" to publish your local commits)
Already up to date.
ERROR: Permission to yardasol/openmc.git denied to Suharyana61.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

When I tried to install the pyne, I have got these messages:

(base) shry@shry3-X450EA:~/ubuntu-nuclear-software-installer$ bash ubuntu-nuclear-software-installer.bash pyne --clean
Installing pyne
Cloning into '/home/shry/projects/pyne'...
remote: Enumerating objects: 43343, done.
remote: Counting objects: 100% (1647/1647), done.
remote: Compressing objects: 100% (678/678), done.
remote: Total 43343 (delta 965), reused 1468 (delta 924), pack-reused 41696
Receiving objects: 100% (43343/43343), 42.47 MiB | 864.00 KiB/s, done.
Resolving deltas: 100% (28688/28688), done.
Updating files: 100% (956/956), done.
remote: Enumerating objects: 430, done.
remote: Counting objects: 100% (430/430), done.
remote: Compressing objects: 100% (130/130), done.
remote: Total 430 (delta 313), reused 390 (delta 298), pack-reused 0
Receiving objects: 100% (430/430), 109.29 KiB | 1.56 MiB/s, done.
Resolving deltas: 100% (313/313), completed with 9 local objects.
From github.com:pyne/pyne

[new branch] 0.7.0-rc -> upstream/0.7.0-rc
[new branch] 0.7.6-rc1 -> upstream/0.7.6-rc1
[new branch] 0.7.7-rc1 -> upstream/0.7.7-rc1
[new branch] deprecated_main -> upstream/deprecated_main
[new branch] develop -> upstream/develop
[new branch] massupdate -> upstream/massupdate
[new branch] mctal_upgrade -> upstream/mctal_upgrade
[new branch] rever -> upstream/rever
[new branch] revert-726-develop -> upstream/revert-726-develop
[new branch] tmpdev -> upstream/tmpdev
[new branch] update_ex -> upstream/update_ex
[new branch] v0.6.0-release -> upstream/v0.6.0-release
[new branch] vb-docs-update -> upstream/vb-docs-update
[new tag] 0.7.4 -> 0.7.4
[new tag] 0.7.5 -> 0.7.5
[new tag] 0.7.6 -> 0.7.6
[new tag] 0.7.7 -> 0.7.7
Already on 'develop'
Your branch is up to date with 'origin/develop'.
Updating f04729a6..0a71174c
Fast-forward
.github/actions/login-buildx-cache/action.yml | 31 --------------
.github/workflows/build_test.yml | 40 ++++--------------
.github/workflows/docker_publish.yml | 259 ++++++++++++++++++++++++++++---------------------------------------------------------------------------------------
CHANGELOG.rst | 6 ++-
docker/ubuntu_20.04-dev.dockerfile | 164 ++++++++++++++++++++++++++++++++++++-------------------------------------
pyne/endf.pyx | 3 +-
pyne/openmc_utils.py | 2 +-
pyne/utils.py | 46 ++++++++++++---------
src/source_sampling.h | 10 +----
tests/test_openmc_utils.py | 8 ++--
tests/test_transmuters.py | 2 +-
tests/test_utils.py | 14 ++++---
12 files changed, 201 insertions(+), 384 deletions(-)
delete mode 100644 .github/actions/login-buildx-cache/action.yml
ERROR: Permission to yardasol/pyne.git denied to Suharyana61.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

Could you please help me solving this problem? Thank you very much.
Best regards, Suharyana

Suharyana61 · 2023-04-08T06:04:31Z

Suharyana61
Apr 8, 2023
Author

when I tried to install openmc, I have got these messages:
(base) shry@shry-HP-Notebook:~/opt/ubuntu-nuclear-software-installer$ bash ubuntu-nuclear-software-installer.bash openmc
Installing openmc
Cloning into '/home/shry/projects/openmc'...
remote: Enumerating objects: 108004, done.
remote: Total 108004 (delta 0), reused 0 (delta 0), pack-reused 108004
Receiving objects: 100% (108004/108004), 64.60 MiB | 1.95 MiB/s, done.
Resolving deltas: 100% (80193/80193), done.
Submodule 'vendor/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'vendor/fmt'
Submodule 'vendor/gsl-lite' (https://github.com/martinmoene/gsl-lite.git) registered for path 'vendor/gsl-lite'
Submodule 'vendor/pugixml' (https://github.com/zeux/pugixml.git) registered for path 'vendor/pugixml'
Submodule 'vendor/xtensor' (https://github.com/xtensor-stack/xtensor.git) registered for path 'vendor/xtensor'
Submodule 'vendor/xtl' (https://github.com/xtensor-stack/xtl.git) registered for path 'vendor/xtl'
Cloning into '/home/shry/projects/openmc/vendor/fmt'...
remote: Enumerating objects: 31738, done.
remote: Counting objects: 100% (94/94), done.
remote: Compressing objects: 100% (40/40), done.
remote: Total 31738 (delta 48), reused 78 (delta 41), pack-reused 31644
Receiving objects: 100% (31738/31738), 13.95 MiB | 1.41 MiB/s, done.
Resolving deltas: 100% (21494/21494), done.
Cloning into '/home/shry/projects/openmc/vendor/gsl-lite'...
remote: Enumerating objects: 4844, done.
remote: Counting objects: 100% (493/493), done.
remote: Compressing objects: 100% (238/238), done.
remote: Total 4844 (delta 361), reused 329 (delta 254), pack-reused 4351
Receiving objects: 100% (4844/4844), 1.41 MiB | 1.20 MiB/s, done.
Resolving deltas: 100% (3339/3339), done.
Cloning into '/home/shry/projects/openmc/vendor/pugixml'...
remote: Enumerating objects: 9268, done.
remote: Counting objects: 100% (435/435), done.
remote: Compressing objects: 100% (225/225), done.
remote: Total 9268 (delta 243), reused 308 (delta 196), pack-reused 8833
Receiving objects: 100% (9268/9268), 6.61 MiB | 1.81 MiB/s, done.
Resolving deltas: 100% (6340/6340), done.
Cloning into '/home/shry/projects/openmc/vendor/xtensor'...
remote: Enumerating objects: 22254, done.
remote: Counting objects: 100% (822/822), done.
remote: Compressing objects: 100% (276/276), done.
remote: Total 22254 (delta 613), reused 686 (delta 507), pack-reused 21432
Receiving objects: 100% (22254/22254), 11.41 MiB | 1.93 MiB/s, done.
Resolving deltas: 100% (15825/15825), done.
Cloning into '/home/shry/projects/openmc/vendor/xtl'...
remote: Enumerating objects: 2446, done.
remote: Counting objects: 100% (305/305), done.
remote: Compressing objects: 100% (136/136), done.
remote: Total 2446 (delta 153), reused 270 (delta 141), pack-reused 2141
Receiving objects: 100% (2446/2446), 728.92 KiB | 1.03 MiB/s, done.
Resolving deltas: 100% (1511/1511), done.
Submodule path 'vendor/fmt': checked out 'd141cdbeb0fb422a3fb7173b285fd38e0d1772dc'
Submodule path 'vendor/gsl-lite': checked out '913e86d49c6a1acca980f4e325378f9dc393493a'
Submodule path 'vendor/pugixml': checked out '41b6ff21c455865bb8ef67c5952b7f895b62bacc'
Submodule path 'vendor/xtensor': checked out '31acec1e90bbea6d4bc17af0710a123bd5da6689'
Submodule path 'vendor/xtl': checked out 'c19750fb1488369dc41f6069bc2b8446fc093e75'
remote: Enumerating objects: 4511, done.
remote: Counting objects: 100% (3233/3233), done.
remote: Compressing objects: 100% (342/342), done.
remote: Total 4511 (delta 2884), reused 3180 (delta 2859), pack-reused 1278
Receiving objects: 100% (4511/4511), 2.98 MiB | 1.46 MiB/s, done.
Resolving deltas: 100% (3247/3247), completed with 322 local objects.
From github.com:openmc-dev/openmc

[new branch] cmfd_flush -> upstream/cmfd_flush
[new branch] code_to_review -> upstream/code_to_review
[new branch] deleted_code -> upstream/deleted_code
[new branch] develop -> upstream/develop
[new branch] gh-pages -> upstream/gh-pages
[new branch] main -> upstream/main
[new branch] master -> upstream/master
[new branch] serpentplots -> upstream/serpentplots
[new branch] threshold-rxn-update -> upstream/threshold-rxn-update
[new branch] yardasol-settings-typo-fix-1 -> upstream/yardasol-settings-typo-fix-1
[new tag] v0.12.1 -> v0.12.1
[new tag] v0.12.2 -> v0.12.2
[new tag] v0.13.0 -> v0.13.0
[new tag] v0.13.1 -> v0.13.1
[new tag] v0.13.2 -> v0.13.2
[new tag] v0.13.3 -> v0.13.3
Already on 'develop'
Your branch is up to date with 'origin/develop'.
Updating 309c78dc7..421365628
Fast-forward
.github/workflows/ci.yml | 43 +-
.../workflows/dockerhub-publish-dagmc-libmesh.yml | 8 +-
.github/workflows/dockerhub-publish-dagmc.yml | 8 +-
.github/workflows/dockerhub-publish-dev.yml | 8 +-
.../dockerhub-publish-develop-dagmc-libmesh.yml | 8 +-
.../workflows/dockerhub-publish-develop-dagmc.yml | 8 +-
.../dockerhub-publish-develop-libmesh.yml | 8 +-
.github/workflows/dockerhub-publish-libmesh.yml | 8 +-
.../dockerhub-publish-release-dagmc-libmesh.yml | 10 +-
.../workflows/dockerhub-publish-release-dagmc.yml | 10 +-
.../dockerhub-publish-release-libmesh.yml | 10 +-
.github/workflows/dockerhub-publish-release.yml | 10 +-
.github/workflows/dockerhub-publish.yml | 8 +-
.gitmodules | 3 +
CMakeLists.txt | 58 +-
LICENSE | 2 +-
cmake/OpenMCConfig.cmake.in | 9 +
docs/source/_images/hexlat_anim.gif | Bin 0 -> 1233034 bytes
docs/source/conf.py | 8 +-
docs/source/devguide/tests.rst | 35 +-
docs/source/io_formats/settings.rst | 45 +-
docs/source/io_formats/statepoint.rst | 23 +-
docs/source/io_formats/tallies.rst | 3 +
docs/source/license.rst | 2 +-
docs/source/methods/cross_sections.rst | 28 +
docs/source/pythonapi/base.rst | 2 +-
docs/source/pythonapi/data.rst | 3 +-
docs/source/pythonapi/model.rst | 1 +
docs/source/pythonapi/stats.rst | 1 +
docs/source/releasenotes/0.13.2.rst | 2 +-
docs/source/releasenotes/0.13.3.rst | 134 +
docs/source/releasenotes/index.rst | 1 +
docs/source/usersguide/install.rst | 79 +-
docs/source/usersguide/materials.rst | 37 +
docs/source/usersguide/plots.rst | 88 +
docs/source/usersguide/scripts.rst | 4 +-
docs/source/usersguide/settings.rst | 5 +-
docs/source/usersguide/tallies.rst | 5 +-
include/openmc/cell.h | 146 +-
include/openmc/constants.h | 6 +-
include/openmc/cross_sections.h | 5 +
include/openmc/dagmc.h | 3 +-
include/openmc/distribution.h | 60 +-
include/openmc/distribution_energy.h | 12 +-
include/openmc/distribution_multi.h | 6 +-
include/openmc/distribution_spatial.h | 34 +-
include/openmc/file_utils.h | 18 +
include/openmc/geometry_aux.h | 6 +
include/openmc/initialize.h | 10 +-
include/openmc/lattice.h | 50 +-
include/openmc/material.h | 16 +
include/openmc/mcpl_interface.h | 36 +
include/openmc/mesh.h | 82 +-
include/openmc/ncrystal_interface.h | 94 +
include/openmc/photon.h | 3 +
include/openmc/physics.h | 9 +-
include/openmc/plot.h | 215 +-
include/openmc/position.h | 5 +
include/openmc/scattdata.h | 45 +-
include/openmc/settings.h | 8 +-
include/openmc/source.h | 1 +
include/openmc/surface.h | 137 +-
include/openmc/tallies/filter.h | 52 +-
include/openmc/tallies/filter_azimuthal.h | 3 +-
include/openmc/tallies/filter_cell.h | 3 +-
include/openmc/tallies/filter_cell_instance.h | 3 +-
include/openmc/tallies/filter_cellborn.h | 5 +-
include/openmc/tallies/filter_cellfrom.h | 3 +-
include/openmc/tallies/filter_collision.h | 3 +-
include/openmc/tallies/filter_delayedgroup.h | 3 +-
include/openmc/tallies/filter_distribcell.h | 3 +-
include/openmc/tallies/filter_energy.h | 6 +-
include/openmc/tallies/filter_energyfunc.h | 3 +-
include/openmc/tallies/filter_legendre.h | 3 +-
include/openmc/tallies/filter_material.h | 3 +-
include/openmc/tallies/filter_mesh.h | 3 +-
include/openmc/tallies/filter_meshsurface.h | 3 +-
include/openmc/tallies/filter_mu.h | 3 +-
include/openmc/tallies/filter_particle.h | 3 +-
include/openmc/tallies/filter_polar.h | 3 +-
include/openmc/tallies/filter_sph_harm.h | 3 +-
include/openmc/tallies/filter_sptl_legendre.h | 3 +-
include/openmc/tallies/filter_surface.h | 3 +-
include/openmc/tallies/filter_time.h | 3 +-
include/openmc/tallies/filter_universe.h | 3 +-
include/openmc/tallies/filter_zernike.h | 6 +-
include/openmc/tallies/tally.h | 8 +-
include/openmc/volume_calc.h | 2 +
include/openmc/xml_interface.h | 4 +
man/man1/openmc.1 | 2 +-
openmc/init.py | 2 +-
openmc/_xml.py | 54 +-
openmc/arithmetic.py | 4 +
openmc/cell.py | 17 +-
openmc/cmfd.py | 6 +-
openmc/config.py | 4 +-
openmc/data/ace.py | 4 +-
openmc/data/data.py | 35 +-
openmc/data/decay.py | 52 +-
openmc/data/endf.py | 12 +-
openmc/data/mass16.txt | 3475 ---
openmc/data/mass_1.mas20.txt | 3594 +++
openmc/data/multipole.py | 12 +-
openmc/data/neutron.py | 7 +-
openmc/data/njoy.py | 6 +-
openmc/data/photon.py | 13 +-
openmc/data/reaction.py | 2 +-
openmc/data/thermal.py | 39 +-
openmc/deplete/abc.py | 10 +-
openmc/deplete/chain.py | 38 +-
openmc/deplete/coupled_operator.py | 3 +-
openmc/deplete/helpers.py | 12 +-
openmc/deplete/independent_operator.py | 22 +-
openmc/deplete/nuclide.py | 2 +-
openmc/deplete/openmc_operator.py | 16 +-
openmc/deplete/pool.py | 7 +-
openmc/deplete/results.py | 9 +-
openmc/deplete/stepresult.py | 26 +-
openmc/element.py | 8 +-
openmc/executor.py | 78 +-
openmc/filter.py | 66 +-
openmc/geometry.py | 236 +-
openmc/lib/init.py | 6 +
openmc/material.py | 296 +-
openmc/mesh.py | 125 +-
openmc/mgxs/groups.py | 2 +-
openmc/mgxs/library.py | 34 +-
openmc/mgxs/mdgxs.py | 4 +-
openmc/mgxs/mgxs.py | 18 +-
openmc/model/model.py | 129 +-
openmc/model/surface_composite.py | 462 +-
openmc/nuclide.py | 2 +-
openmc/plots.py | 786 +-
openmc/plotter.py | 172 +-
openmc/settings.py | 405 +-
openmc/source.py | 7 +-
openmc/stats/multivariate.py | 132 +-
openmc/stats/univariate.py | 37 +-
openmc/surface.py | 2 +-
openmc/tallies.py | 138 +-
openmc/universe.py | 68 +-
pyproject.toml | 2 +-
scripts/openmc-update-inputs | 5 +-
setup.py | 3 +-
src/cell.cpp | 869 +-
src/cross_sections.cpp | 5 +
src/dagmc.cpp | 46 +-
src/distribution.cpp | 113 +-
src/distribution_spatial.cpp | 63 +-
src/finalize.cpp | 1 +
src/geometry.cpp | 2 +-
src/geometry_aux.cpp | 10 +-
src/initialize.cpp | 125 +-
src/material.cpp | 60 +-
src/mcpl_interface.cpp | 247 +
src/mesh.cpp | 194 +-
src/ncrystal_interface.cpp | 108 +
src/nuclide.cpp | 39 +-
src/output.cpp | 69 +-
src/particle.cpp | 8 +-
src/photon.cpp | 37 +-
src/physics.cpp | 44 +-
src/plot.cpp | 978 +-
src/settings.cpp | 58 +-
src/simulation.cpp | 27 +-
src/source.cpp | 9 +-
src/state_point.cpp | 10 +-
src/surface.cpp | 2 +-
src/tallies/filter.cpp | 19 +-
src/tallies/filter_cell.cpp | 2 +-
src/tallies/filter_cellborn.cpp | 4 +-
src/tallies/filter_mesh.cpp | 8 +-
src/tallies/tally.cpp | 17 +-
src/tallies/trigger.cpp | 93 +-
src/thermal.cpp | 49 +-
src/universe.cpp | 36 +-
src/weight_windows.cpp | 6 +-
src/xml_interface.cpp | 7 +
tests/chain_simple.xml | 4 +-
tests/cpp_unit_tests/CMakeLists.txt | 10 +
tests/cpp_unit_tests/test_distribution.cpp | 81 +
.../adj_cell_rotation/inputs_true.dat | 74 +-
.../adj_cell_rotation/results_true.dat | 2 +-
.../asymmetric_lattice/inputs_true.dat | 411 +-
.../asymmetric_lattice/results_true.dat | 2 +-
tests/regression_tests/cmfd_feed/geometry.xml | 43 -
tests/regression_tests/cmfd_feed/materials.xml | 12 -
tests/regression_tests/cmfd_feed/model.xml | 51 +
tests/regression_tests/cmfd_feed/results_true.dat | 614 +-
tests/regression_tests/cmfd_feed/settings.xml | 26 -
tests/regression_tests/cmfd_feed/tallies.xml | 21 -
tests/regression_tests/cmfd_feed/test.py | 2 +-
.../regression_tests/cmfd_feed_2g/results_true.dat | 536 +-
.../cmfd_feed_expanding_window/geometry.xml | 43 -
.../cmfd_feed_expanding_window/materials.xml | 12 -
.../cmfd_feed_expanding_window/model.xml | 51 +
.../cmfd_feed_expanding_window/results_true.dat | 564 +-
.../cmfd_feed_expanding_window/settings.xml | 26 -
.../cmfd_feed_expanding_window/tallies.xml | 21 -
.../regression_tests/cmfd_feed_ng/results_true.dat | 678 +-
.../cmfd_feed_rectlin/geometry.xml | 43 -
.../cmfd_feed_rectlin/materials.xml | 12 -
tests/regression_tests/cmfd_feed_rectlin/model.xml | 51 +
.../cmfd_feed_rectlin/results_true.dat | 780 +-
.../cmfd_feed_rectlin/settings.xml | 26 -
.../regression_tests/cmfd_feed_rectlin/tallies.xml | 21 -
.../regression_tests/cmfd_feed_ref_d/geometry.xml | 43 -
.../regression_tests/cmfd_feed_ref_d/materials.xml | 12 -
tests/regression_tests/cmfd_feed_ref_d/model.xml | 51 +
.../cmfd_feed_ref_d/results_true.dat | 564 +-
.../regression_tests/cmfd_feed_ref_d/settings.xml | 26 -
tests/regression_tests/cmfd_feed_ref_d/tallies.xml | 21 -
.../cmfd_feed_rolling_window/geometry.xml | 43 -
.../cmfd_feed_rolling_window/materials.xml | 12 -
.../cmfd_feed_rolling_window/model.xml | 51 +
.../cmfd_feed_rolling_window/results_true.dat | 564 +-
.../cmfd_feed_rolling_window/settings.xml | 26 -
.../cmfd_feed_rolling_window/tallies.xml | 21 -
tests/regression_tests/cmfd_nofeed/geometry.xml | 43 -
tests/regression_tests/cmfd_nofeed/materials.xml | 12 -
tests/regression_tests/cmfd_nofeed/model.xml | 51 +
.../regression_tests/cmfd_nofeed/results_true.dat | 614 +-
tests/regression_tests/cmfd_nofeed/settings.xml | 26 -
tests/regression_tests/cmfd_nofeed/tallies.xml | 21 -
tests/regression_tests/cmfd_restart/geometry.xml | 43 -
tests/regression_tests/cmfd_restart/materials.xml | 12 -
tests/regression_tests/cmfd_restart/model.xml | 54 +
.../regression_tests/cmfd_restart/results_true.dat | 614 +-
tests/regression_tests/cmfd_restart/settings.xml | 28 -
tests/regression_tests/cmfd_restart/tallies.xml | 21 -
tests/regression_tests/complex_cell/geometry.xml | 2 +-
.../regression_tests/complex_cell/results_true.dat | 18 +-
.../confidence_intervals/results_true.dat | 6 +-
tests/regression_tests/cpp_driver/inputs_true.dat | 84 +-
tests/regression_tests/cpp_driver/results_true.dat | 22 +-
.../create_fission_neutrons/inputs_true.dat | 71 +-
.../create_fission_neutrons/test.py | 16 +-
.../dagmc/external/inputs_true.dat | 77 +-
.../dagmc/external/results_true.dat | 6 +-
.../regression_tests/dagmc/legacy/inputs_true.dat | 75 +-
.../regression_tests/dagmc/legacy/results_true.dat | 6 +-
tests/regression_tests/dagmc/legacy/test.py | 21 +-
tests/regression_tests/dagmc/refl/inputs_true.dat | 55 +-
tests/regression_tests/dagmc/refl/results_true.dat | 6 +-
tests/regression_tests/dagmc/refl/test.py | 25 +-
.../dagmc/universes/inputs_true.dat | 108 +-
.../dagmc/universes/results_true.dat | 2 +-
tests/regression_tests/dagmc/universes/test.py | 23 +-
tests/regression_tests/dagmc/uwuw/inputs_true.dat | 55 +-
tests/regression_tests/dagmc/uwuw/test.py | 24 +-
tests/regression_tests/density/results_true.dat | 2 +-
.../regression_tests/deplete_no_transport/test.py | 26 +-
.../test_reference_fission_q.h5 | Bin 36312 -> 36312 bytes
.../test_reference_source_rate.h5 | Bin 36312 -> 36312 bytes
.../last_step_reference_materials.xml | 1296 +-
.../deplete_with_transport/test.py | 19 +
.../deplete_with_transport/test_reference.h5 | Bin 166224 -> 163736 bytes
tests/regression_tests/diff_tally/inputs_true.dat | 723 +-
tests/regression_tests/diff_tally/results_true.dat | 220 +-
tests/regression_tests/diff_tally/test.py | 5 +-
tests/regression_tests/distribmat/inputs_true.dat | 117 +-
tests/regression_tests/distribmat/results_true.dat | 4 +-
tests/regression_tests/distribmat/test.py | 17 +-
.../eigenvalue_genperbatch/inputs_true.dat | 59 +-
.../eigenvalue_genperbatch/results_true.dat | 6 +-
.../eigenvalue_no_inactive/results_true.dat | 2 +-
.../regression_tests/energy_cutoff/inputs_true.dat | 81 +-
tests/regression_tests/energy_cutoff/test.py | 15 +-
.../regression_tests/energy_grid/results_true.dat | 2 +-
tests/regression_tests/energy_laws/inputs_true.dat | 44 +-
tests/regression_tests/entropy/results_true.dat | 20 +-
.../regression_tests/external_moab/inputs_true.dat | 143 +-
tests/regression_tests/external_moab/test.py | 2 -
.../filter_cellinstance/inputs_true.dat | 119 +-
.../filter_cellinstance/results_true.dat | 162 +-
.../filter_distribcell/case-3/results_true.dat | 2 +-
.../filter_distribcell/case-4/geometry.xml | 23 -
.../filter_distribcell/case-4/materials.xml | 19 -
.../filter_distribcell/case-4/model.xml | 61 +
.../filter_distribcell/case-4/settings.xml | 12 -
.../filter_distribcell/case-4/tallies.xml | 14 -
.../filter_energyfun/inputs_true.dat | 209 +-
tests/regression_tests/filter_mesh/inputs_true.dat | 299 +-
.../regression_tests/filter_mesh/results_true.dat | 2 +-
.../filter_translations/inputs_true.dat | 165 +-
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tests/regression_tests/infinite_cell/geometry.xml | 17 -
tests/regression_tests/infinite_cell/model.xml | 39 +
.../infinite_cell/results_true.dat | 2 +-
tests/regression_tests/infinite_cell/settings.xml | 15 -
tests/regression_tests/iso_in_lab/inputs_true.dat | 488 +-
tests/regression_tests/iso_in_lab/results_true.dat | 2 +-
tests/regression_tests/lattice/results_true.dat | 2 +-
.../regression_tests/lattice_hex/results_true.dat | 2 +-
.../lattice_hex_coincident/inputs_true.dat | 160 +-
.../lattice_hex_coincident/results_true.dat | 2 +-
.../lattice_hex_coincident/test.py | 13 +-
.../regression_tests/lattice_hex_x/inputs_true.dat | 160 +-
.../lattice_hex_x/results_true.dat | 2 +-
tests/regression_tests/lattice_hex_x/test.py | 15 +-
.../lattice_multiple/inputs_true.dat | 96 +-
.../lattice_multiple/results_true.dat | 2 +-
.../lattice_rotated/inputs_true.dat | 114 +-
.../lattice_rotated/results_true.dat | 2 +-
tests/regression_tests/mg_basic/inputs_true.dat | 126 +-
.../mg_basic_delayed/inputs_true.dat | 124 +-
tests/regression_tests/mg_convert/inputs_true.dat | 56 +-
tests/regression_tests/mg_convert/test.py | 12 +-
tests/regression_tests/mg_legendre/inputs_true.dat | 64 +-
.../regression_tests/mg_max_order/inputs_true.dat | 66 +-
.../mg_survival_biasing/inputs_true.dat | 66 +-
tests/regression_tests/mg_tallies/inputs_true.dat | 327 +-
tests/regression_tests/mg_temperature/build_2g.py | 593 +-
.../mgxs_library_ce_to_mg/inputs_true.dat | 499 +-
.../mgxs_library_ce_to_mg/results_true.dat | 2 +-
.../regression_tests/mgxs_library_ce_to_mg/test.py | 9 +-
.../mgxs_library_ce_to_mg_nuclides/inputs_true.dat | 499 +-
.../results_true.dat | 2 +-
.../mgxs_library_ce_to_mg_nuclides/test.py | 9 +-
.../mgxs_library_condense/inputs_true.dat | 1061 +-
.../mgxs_library_condense/results_true.dat | 576 +-
.../mgxs_library_correction/inputs_true.dat | 685 +-
.../mgxs_library_correction/results_true.dat | 88 +-
.../mgxs_library_distribcell/inputs_true.dat | 1047 +-
.../mgxs_library_distribcell/results_true.dat | 126 +-
.../mgxs_library_hdf5/inputs_true.dat | 1061 +-
.../mgxs_library_hdf5/results_true.dat | 286 +-
.../mgxs_library_histogram/inputs_true.dat | 535 +-
.../mgxs_library_histogram/results_true.dat | 672 +-
.../mgxs_library_mesh/inputs_true.dat | 1021 +-
.../mgxs_library_mesh/results_true.dat | 542 +-
.../mgxs_library_no_nuclides/inputs_true.dat | 3901 ++-
.../mgxs_library_no_nuclides/results_true.dat | 858 +-
.../mgxs_library_nuclides/inputs_true.dat | 3535 ++-
.../mgxs_library_nuclides/results_true.dat | 2 +-
.../mgxs_library_specific_nuclides/init.py | 0
.../mgxs_library_specific_nuclides/inputs_true.dat | 217 +
.../results_true.dat | 1 +
.../mgxs_library_specific_nuclides/test.py | 71 +
tests/regression_tests/microxs/test.py | 8 +-
tests/regression_tests/microxs/test_reference.csv | 24 +-
tests/regression_tests/model_xml/init.py | 0
.../model_xml/adj_cell_rotation_inputs_true.dat | 38 +
.../model_xml/energy_laws_inputs_true.dat | 23 +
tests/regression_tests/model_xml/inputs_true.dat | 67 +
.../model_xml/lattice_multiple_inputs_true.dat | 53 +
.../model_xml/photon_production_inputs_true.dat | 67 +
tests/regression_tests/model_xml/test.py | 100 +
tests/regression_tests/multipole/inputs_true.dat | 103 +-
tests/regression_tests/multipole/results_true.dat | 54 +-
tests/regression_tests/ncrystal/init.py | 0
tests/regression_tests/ncrystal/inputs_true.dat | 44 +
tests/regression_tests/ncrystal/results_true.dat | 181 +
tests/regression_tests/ncrystal/test.py | 80 +
tests/regression_tests/output/results_true.dat | 2 +-
.../particle_restart_eigval/results_true.dat | 8 +-
.../particle_restart_eigval/test.py | 2 +-
tests/regression_tests/periodic/inputs_true.dat | 72 +-
tests/regression_tests/periodic/results_true.dat | 2 +-
.../periodic_6fold/inputs_true.dat | 66 +-
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tests/regression_tests/periodic_6fold/test.py | 18 +-
.../regression_tests/periodic_hex/inputs_true.dat | 46 +-
.../regression_tests/periodic_hex/results_true.dat | 2 +-
.../photon_production/inputs_true.dat | 133 +-
.../photon_production_fission/inputs_true.dat | 95 +-
.../photon_production_fission/results_true.dat | 58 +-
.../regression_tests/photon_source/inputs_true.dat | 87 +-
tests/regression_tests/photon_source/test.py | 15 +-
tests/regression_tests/plot/geometry.xml | 13 -
tests/regression_tests/plot/model.xml | 76 +
tests/regression_tests/plot/plots.xml | 33 -
tests/regression_tests/plot/test.py | 55 +-
tests/regression_tests/plot_overlaps/geometry.xml | 14 -
tests/regression_tests/plot_overlaps/materials.xml | 19 -
tests/regression_tests/plot_overlaps/model.xml | 65 +
tests/regression_tests/plot_overlaps/plots.xml | 35 -
tests/regression_tests/plot_overlaps/settings.xml | 13 -
tests/regression_tests/plot_overlaps/test.py | 55 +-
.../regression_tests/plot_projections/init.py | 0
.../regression_tests/plot_projections/geometry.xml | 15 +
.../{plot => plot_projections}/materials.xml | 4 +-
tests/regression_tests/plot_projections/plots.xml | 55 +
.../plot_projections/results_true.dat | 1 +
.../{plot => plot_projections}/settings.xml | 0
.../{plot => plot_projections}/tallies.xml | 0
tests/regression_tests/plot_projections/test.py | 6 +
tests/regression_tests/plot_voxel/geometry.xml | 13 -
tests/regression_tests/plot_voxel/materials.xml | 19 -
tests/regression_tests/plot_voxel/model.xml | 42 +
tests/regression_tests/plot_voxel/plots.xml | 10 -
tests/regression_tests/plot_voxel/settings.xml | 13 -
tests/regression_tests/plot_voxel/test.py | 55 +-
.../regression_tests/ptables_off/results_true.dat | 2 +-
.../quadric_surfaces/results_true.dat | 2 +-
.../reflective_plane/results_true.dat | 2 +-
.../resonance_scattering/inputs_true.dat | 66 +-
.../resonance_scattering/results_true.dat | 2 +-
.../regression_tests/resonance_scattering/test.py | 14 +-
tests/regression_tests/rotation/results_true.dat | 2 +-
tests/regression_tests/salphabeta/inputs_true.dat | 118 +-
tests/regression_tests/salphabeta/results_true.dat | 2 +-
.../regression_tests/score_current/inputs_true.dat | 107 +-
.../score_current/results_true.dat | 1844 +-
tests/regression_tests/seed/results_true.dat | 2 +-
tests/regression_tests/source/inputs_true.dat | 298 +-
tests/regression_tests/source/results_true.dat | 2 +-
tests/regression_tests/source/test.py | 27 +-
.../regression_tests/source_dlopen/inputs_true.dat | 44 +-
.../regression_tests/source_file/results_true.dat | 2 +-
.../regression_tests/source_mcpl_file/init.py | 0
.../regression_tests/source_mcpl_file/geometry.xml | 8 +
.../materials.xml | 5 -
.../source_mcpl_file/results_true.dat | 2 +
.../regression_tests/source_mcpl_file/settings.xml | 15 +
tests/regression_tests/source_mcpl_file/test.py | 101 +
.../source_parameterized_dlopen/inputs_true.dat | 44 +-
.../sourcepoint_batch/results_true.dat | 4 +-
.../sourcepoint_latest/results_true.dat | 2 +-
.../sourcepoint_restart/results_true.dat | 886 +-
.../statepoint_batch/results_true.dat | 2 +-
.../statepoint_restart/results_true.dat | 1210 +-
tests/regression_tests/statepoint_restart/test.py | 31 +-
.../statepoint_sourcesep/results_true.dat | 2 +-
.../surface_source/inputs_true_read.dat | 65 +-
.../surface_source/inputs_true_write.dat | 77 +-
.../surface_source/surface_source_true.h5 | Bin 106144 -> 106144 bytes
.../regression_tests/surface_tally/inputs_true.dat | 203 +-
.../surface_tally/results_true.dat | 96 +-
tests/regression_tests/surface_tally/test.py | 20 +-
.../survival_biasing/results_true.dat | 34 +-
tests/regression_tests/tallies/inputs_true.dat | 853 +-
tests/regression_tests/tallies/results_true.dat | 2 +-
tests/regression_tests/tallies/test.py | 2 +-
.../tally_aggregation/inputs_true.dat | 107 +-
.../tally_aggregation/results_true.dat | 194 +-
.../tally_arithmetic/inputs_true.dat | 109 +-
.../tally_arithmetic/results_true.dat | 98 +-
.../tally_assumesep/results_true.dat | 14 +-
.../tally_nuclides/results_true.dat | 50 +-
.../tally_slice_merge/inputs_true.dat | 541 +-
.../tally_slice_merge/results_true.dat | 104 +-
tests/regression_tests/torus/inputs_true.dat | 66 +-
.../torus/large_major/inputs_true.dat | 71 +-
tests/regression_tests/torus/results_true.dat | 2 +-
tests/regression_tests/trace/results_true.dat | 2 +-
tests/regression_tests/track_output/geometry.xml | 305 -
tests/regression_tests/track_output/materials.xml | 95 -
tests/regression_tests/track_output/model.xml | 299 +
.../regression_tests/track_output/results_true.dat | 194 +-
tests/regression_tests/track_output/settings.xml | 23 -
.../regression_tests/translation/results_true.dat | 2 +-
.../trigger_batch_interval/results_true.dat | 50 +-
.../trigger_no_batch_interval/results_true.dat | 50 +-
.../trigger_no_status/results_true.dat | 50 +-
.../trigger_statepoint_restart/inputs_true.dat | 67 +-
.../trigger_statepoint_restart/results_true.dat | 6 +-
.../trigger_tallies/results_true.dat | 50 +-
tests/regression_tests/triso/inputs_true.dat | 878 +-
tests/regression_tests/triso/results_true.dat | 2 +-
tests/regression_tests/triso/test.py | 14 +-
tests/regression_tests/uniform_fs/results_true.dat | 2 +-
tests/regression_tests/universe/results_true.dat | 2 +-
.../unstructured_mesh/inputs_true.dat | 179 +-
.../unstructured_mesh/inputs_true0.dat | 179 +-
.../unstructured_mesh/inputs_true1.dat | 179 +-
.../unstructured_mesh/inputs_true10.dat | 179 +-
.../unstructured_mesh/inputs_true11.dat | 179 +-
.../unstructured_mesh/inputs_true12.dat | 179 +-
.../unstructured_mesh/inputs_true13.dat | 179 +-
.../unstructured_mesh/inputs_true14.dat | 179 +-
.../unstructured_mesh/inputs_true15.dat | 179 +-
.../unstructured_mesh/inputs_true2.dat | 179 +-
.../unstructured_mesh/inputs_true3.dat | 179 +-
.../unstructured_mesh/inputs_true4.dat | 181 +-
.../unstructured_mesh/inputs_true5.dat | 181 +-
.../unstructured_mesh/inputs_true6.dat | 181 +-
.../unstructured_mesh/inputs_true7.dat | 181 +-
.../unstructured_mesh/inputs_true8.dat | 179 +-
.../unstructured_mesh/inputs_true9.dat | 179 +-
.../unstructured_mesh/results_true.dat | 30000 +++----------------
tests/regression_tests/void/inputs_true.dat | 261 +-
tests/regression_tests/volume_calc/inputs_true.dat | 148 +-
.../volume_calc/inputs_true_mg.dat | 150 +-
tests/regression_tests/volume_calc/test.py | 10 +-
.../regression_tests/weightwindows/inputs_true.dat | 189 +-
.../regression_tests/white_plane/results_true.dat | 2 +-
tests/testing_harness.py | 68 +-
tests/unit_tests/test_cell.py | 37 +-
tests/unit_tests/test_cylindrical_mesh.py | 196 +
tests/unit_tests/test_data_misc.py | 22 +-
tests/unit_tests/test_data_neutron.py | 9 +
tests/unit_tests/test_deplete_activation.py | 6 +-
tests/unit_tests/test_deplete_decay_products.py | 43 +
tests/unit_tests/test_deplete_resultslist.py | 10 +-
tests/unit_tests/test_filter_mesh.py | 148 +-
tests/unit_tests/test_filters.py | 20 +
tests/unit_tests/test_geometry.py | 45 +-
tests/unit_tests/test_material.py | 58 +
tests/unit_tests/test_mesh.py | 35 +
tests/unit_tests/test_mesh_tets.e | 1 +
tests/unit_tests/test_mesh_to_vtk.py | 227 +-
tests/unit_tests/test_model.py | 38 +
tests/unit_tests/test_plots.py | 52 +-
tests/unit_tests/test_plotter.py | 81 +
tests/unit_tests/test_settings.py | 6 +-
tests/unit_tests/test_source_mesh.py | 203 +
tests/unit_tests/test_spherical_mesh.py | 209 +
tests/unit_tests/test_stats.py | 11 +-
tests/unit_tests/test_surface_composite.py | 79 +
tests/unit_tests/test_temp_interp.py | 112 +-
tests/unit_tests/test_triggers.py | 75 +
tests/unit_tests/test_universe.py | 48 +-
tests/unit_tests/weightwindows/test.py | 2 +-
tools/ci/gha-install-mcpl.sh | 7 +
tools/ci/gha-install-ncrystal.sh | 46 +
tools/ci/gha-install.py | 14 +-
tools/ci/gha-install.sh | 16 +-
tools/ci/gha-script.sh | 9 +-
vendor/Catch2 | 1 +
521 files changed, 40400 insertions(+), 55388 deletions(-)
create mode 100644 docs/source/_images/hexlat_anim.gif
create mode 100644 docs/source/releasenotes/0.13.3.rst
create mode 100644 include/openmc/mcpl_interface.h
create mode 100644 include/openmc/ncrystal_interface.h
delete mode 100644 openmc/data/mass16.txt
create mode 100644 openmc/data/mass_1.mas20.txt
create mode 100644 src/mcpl_interface.cpp
create mode 100644 src/ncrystal_interface.cpp
create mode 100644 tests/cpp_unit_tests/CMakeLists.txt
create mode 100644 tests/cpp_unit_tests/test_distribution.cpp
delete mode 100644 tests/regression_tests/cmfd_feed/geometry.xml
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delete mode 100644 tests/regression_tests/cmfd_feed_expanding_window/geometry.xml
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delete mode 100644 tests/regression_tests/cmfd_feed_rectlin/geometry.xml
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delete mode 100644 tests/regression_tests/cmfd_feed_ref_d/geometry.xml
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delete mode 100644 tests/regression_tests/cmfd_feed_rolling_window/geometry.xml
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create mode 100644 tests/regression_tests/cmfd_feed_rolling_window/model.xml
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delete mode 100644 tests/regression_tests/cmfd_feed_rolling_window/tallies.xml
delete mode 100644 tests/regression_tests/cmfd_nofeed/geometry.xml
delete mode 100644 tests/regression_tests/cmfd_nofeed/materials.xml
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delete mode 100644 tests/regression_tests/filter_distribcell/case-4/geometry.xml
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delete mode 100644 tests/regression_tests/infinite_cell/geometry.xml
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delete mode 100644 tests/regression_tests/infinite_cell/settings.xml
create mode 100644 tests/regression_tests/mgxs_library_specific_nuclides/init.py
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create mode 100644 tests/regression_tests/mgxs_library_specific_nuclides/results_true.dat
create mode 100644 tests/regression_tests/mgxs_library_specific_nuclides/test.py
create mode 100644 tests/regression_tests/model_xml/init.py
create mode 100644 tests/regression_tests/model_xml/adj_cell_rotation_inputs_true.dat
create mode 100644 tests/regression_tests/model_xml/energy_laws_inputs_true.dat
create mode 100644 tests/regression_tests/model_xml/inputs_true.dat
create mode 100644 tests/regression_tests/model_xml/lattice_multiple_inputs_true.dat
create mode 100644 tests/regression_tests/model_xml/photon_production_inputs_true.dat
create mode 100644 tests/regression_tests/model_xml/test.py
create mode 100644 tests/regression_tests/ncrystal/init.py
create mode 100644 tests/regression_tests/ncrystal/inputs_true.dat
create mode 100644 tests/regression_tests/ncrystal/results_true.dat
create mode 100644 tests/regression_tests/ncrystal/test.py
delete mode 100644 tests/regression_tests/plot/geometry.xml
create mode 100644 tests/regression_tests/plot/model.xml
delete mode 100644 tests/regression_tests/plot/plots.xml
delete mode 100644 tests/regression_tests/plot_overlaps/geometry.xml
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delete mode 100644 tests/regression_tests/plot_overlaps/settings.xml
create mode 100644 tests/regression_tests/plot_projections/init.py
create mode 100644 tests/regression_tests/plot_projections/geometry.xml
rename tests/regression_tests/{plot => plot_projections}/materials.xml (80%)
create mode 100644 tests/regression_tests/plot_projections/plots.xml
create mode 100644 tests/regression_tests/plot_projections/results_true.dat
rename tests/regression_tests/{plot => plot_projections}/settings.xml (100%)
rename tests/regression_tests/{plot => plot_projections}/tallies.xml (100%)
create mode 100644 tests/regression_tests/plot_projections/test.py
delete mode 100644 tests/regression_tests/plot_voxel/geometry.xml
delete mode 100644 tests/regression_tests/plot_voxel/materials.xml
create mode 100644 tests/regression_tests/plot_voxel/model.xml
delete mode 100644 tests/regression_tests/plot_voxel/plots.xml
delete mode 100644 tests/regression_tests/plot_voxel/settings.xml
create mode 100644 tests/regression_tests/source_mcpl_file/init.py
create mode 100644 tests/regression_tests/source_mcpl_file/geometry.xml
rename tests/regression_tests/{infinite_cell => source_mcpl_file}/materials.xml (58%)
create mode 100644 tests/regression_tests/source_mcpl_file/results_true.dat
create mode 100644 tests/regression_tests/source_mcpl_file/settings.xml
create mode 100644 tests/regression_tests/source_mcpl_file/test.py
delete mode 100644 tests/regression_tests/track_output/geometry.xml
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delete mode 100644 tests/regression_tests/track_output/settings.xml
create mode 100644 tests/unit_tests/test_cylindrical_mesh.py
create mode 100644 tests/unit_tests/test_deplete_decay_products.py
create mode 100644 tests/unit_tests/test_mesh.py
create mode 120000 tests/unit_tests/test_mesh_tets.e
create mode 100644 tests/unit_tests/test_plotter.py
create mode 100644 tests/unit_tests/test_source_mesh.py
create mode 100644 tests/unit_tests/test_spherical_mesh.py
create mode 100644 tests/unit_tests/test_triggers.py
create mode 100755 tools/ci/gha-install-mcpl.sh
create mode 100755 tools/ci/gha-install-ncrystal.sh
create mode 160000 vendor/Catch2
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Suharyana61 Apr 8, 2023 Author

Suharyana61
Apr 1, 2023

Suharyana61
Apr 8, 2023
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