diff --git a/src/analysis.ts b/src/analysis.ts
index 5578f6c2..cc2478d4 100644
--- a/src/analysis.ts
+++ b/src/analysis.ts
@@ -410,6 +410,36 @@ export function constantStructureViolations(matrix: Interval[][]) {
   return result
 }
 
+/**
+ * Compute a matrix of constant structure violations up to a margin.
+ * @param centsMatrix Interval matrix converted to cents.
+ * @param margin Margin of violation in cents.
+ * @returns Boolean array of CS violations within the given margin.
+ */
+export function marginViolations(centsMatrix: number[][], margin: number) {
+  const result: boolean[][] = []
+  for (let i = 0; i < centsMatrix.length; ++i) {
+    result.push(Array(centsMatrix[i].length).fill(false))
+  }
+  for (let i = 0; i < centsMatrix[0].length; ++i) {
+    for (let j = 0; j < centsMatrix.length; ++j) {
+      if (result[j][i]) {
+        continue
+      }
+      const cents = centsMatrix[j][i]
+      for (let k = i + 1; k < centsMatrix[0].length; ++k) {
+        for (let l = 0; l < centsMatrix.length; ++l) {
+          if (Math.abs(centsMatrix[l][k] - cents) < margin) {
+            result[j][i] = true
+            result[l][k] = true
+          }
+        }
+      }
+    }
+  }
+  return result
+}
+
 export function varietySignature(matrix: Interval[][]) {
   const result: number[] = []
   if (!matrix.length) {
@@ -431,12 +461,12 @@ export function varietySignature(matrix: Interval[][]) {
   return result
 }
 
-export function brightnessSignature(matrix: Interval[][]) {
-  const totals = matrix.map((row) => row.reduce((prev, cur) => prev + cur.totalCents(), 0))
+export function brightnessSignature(centsMatrix: number[][]) {
+  const totals = centsMatrix.map((row) => row.reduce((prev, cur) => prev + cur, 0))
   const minimum = Math.min(...totals)
   const maximum = Math.max(...totals)
   if (minimum === maximum) {
-    return Array(matrix.length).fill(1)
+    return Array(centsMatrix.length).fill(1)
   }
   const normalizer = 1 / (maximum - minimum)
   return totals.map((t) => (t - minimum) * normalizer)
diff --git a/src/stores/state.ts b/src/stores/state.ts
index c56231ea..eb3b9a9c 100644
--- a/src/stores/state.ts
+++ b/src/stores/state.ts
@@ -33,6 +33,9 @@ export const useStateStore = defineStore('state', () => {
   )
   const calculateVariety = ref(storage.getItem('calculateVariety') === 'true')
   const calculateBrightness = ref(storage.getItem('calculateBrightness') === 'true')
+  const constantStructureMargin = ref(
+    parseInt(storage.getItem('constantStructureMargin') ?? '0', 10)
+  )
 
   // Special keyboard codes also from local storage.
   const deactivationCode = ref(storage.getItem('deactivationCode') ?? 'Backquote')
@@ -52,6 +55,7 @@ export const useStateStore = defineStore('state', () => {
     calculateConstantStructureViolations,
     calculateVariety,
     calculateBrightness,
+    constantStructureMargin,
     deactivationCode,
     equaveUpCode,
     equaveDownCode,
@@ -85,6 +89,7 @@ export const useStateStore = defineStore('state', () => {
     calculateConstantStructureViolations,
     calculateVariety,
     calculateBrightness,
+    constantStructureMargin,
     deactivationCode,
     equaveUpCode,
     equaveDownCode,
diff --git a/src/views/AnalysisView.vue b/src/views/AnalysisView.vue
index 20d84c61..69023288 100644
--- a/src/views/AnalysisView.vue
+++ b/src/views/AnalysisView.vue
@@ -4,6 +4,7 @@ import {
   constantStructureViolations,
   freeEquallyTemperedChord,
   intervalMatrix,
+  marginViolations,
   rootedEquallyTemperedChord,
   varietySignature
 } from '@/analysis'
@@ -67,7 +68,7 @@ const strokeStyle = computed(() => {
 // we want more accurate results here.
 function formatMatrixCell(interval: Interval) {
   if (cellFormat.value === 'cents') {
-    return interval.totalCents().toFixed(1)
+    return interval.totalCents(true).toFixed(1)
   }
   if (cellFormat.value === 'decimal') {
     // Consistent with tuning table localization.
@@ -83,13 +84,24 @@ const matrix = computed(() =>
   intervalMatrix(scale.relativeIntervals.slice(0, state.maxMatrixWidth))
 )
 
+const centsMatrix = computed(() => matrix.value.map((row) => row.map((i) => i.totalCents(true))))
+
 const matrixRows = computed(() => matrix.value.map((row) => row.map(formatMatrixCell)))
 
-const violations = computed(() => constantStructureViolations(matrix.value))
+const violations = computed(() => {
+  const margin = state.constantStructureMargin
+  if (margin) {
+    return marginViolations(centsMatrix.value, margin)
+  } else {
+    return constantStructureViolations(matrix.value)
+  }
+})
 
 const variety = computed(() => varietySignature(matrix.value))
 
-const brightness = computed(() => brightnessSignature(matrix.value).map((b) => Math.round(100 * b)))
+const brightness = computed(() =>
+  brightnessSignature(centsMatrix.value).map((b) => Math.round(100 * b))
+)
 
 const heldScaleDegrees = computed(() => {
   const result: Set<number> = new Set()
@@ -109,8 +121,8 @@ const equallyTemperedChordData = computed(() => {
       divisions: 1
     }
   }
-  const frequencies = audio.virtualSynth.voices.map((voice) => voice.frequency)
-  const equaveCents = equave.value.totalCents()
+  const frequencies = audio.virtualSynth.voices.map((voice) => Math.abs(voice.frequency))
+  const equaveCents = equave.value.totalCents(true)
   if (errorModel.value === 'rooted') {
     return rootedEquallyTemperedChord(frequencies, maxDivisions.value, equaveCents)
   }
@@ -128,6 +140,7 @@ function highlight(y?: number, x?: number) {
   if (!state.calculateConstantStructureViolations) {
     return
   }
+  const margin = state.constantStructureMargin
   if (highlights.length !== matrix.value.length) {
     highlights.length = 0
     for (let i = 0; i < matrix.value.length; ++i) {
@@ -136,11 +149,15 @@ function highlight(y?: number, x?: number) {
   }
   // Look at other violators
   if (y !== undefined && x !== undefined && violations.value[y][x]) {
-    const value = matrix.value[y][x].value
+    const value: any = margin ? centsMatrix.value[y][x] : matrix.value[y][x].value
     for (let i = 0; i < matrix.value.length; ++i) {
       for (let j = 0; j < matrix.value[i].length; ++j) {
         if (violations.value[i][j]) {
-          highlights[i][j] = matrix.value[i][j].value.strictEquals(value)
+          if (margin) {
+            highlights[i][j] = Math.abs(centsMatrix.value[i][j] - value) < margin
+          } else {
+            highlights[i][j] = matrix.value[i][j].value.strictEquals(value)
+          }
         } else {
           highlights[i][j] = false
         }
@@ -160,9 +177,13 @@ function highlight(y?: number, x?: number) {
   }
 
   // Look at own column
-  const value = matrix.value[y][x].value
+  const value: any = margin ? centsMatrix.value[y][x] : matrix.value[y][x].value
   for (let i = 0; i < matrix.value.length; ++i) {
-    highlights[i][x] = matrix.value[i][x].value.strictEquals(value)
+    if (margin) {
+      highlights[i][x] = Math.abs(centsMatrix.value[i][x] - value) < margin
+    } else {
+      highlights[i][x] = matrix.value[i][x].value.strictEquals(value)
+    }
   }
 }
 </script>
@@ -257,6 +278,10 @@ function highlight(y?: number, x?: number) {
         />
         <label for="calculate-violators"> Show constant structure violations</label>
       </div>
+      <div class="control">
+        <label for="cs-margin">Constant structure margin in cents</label>
+        <input id="cs-margin" type="number" min="0" v-model="state.constantStructureMargin" />
+      </div>
       <div class="control checkbox-container">
         <input id="calculate-variety" type="checkbox" v-model="state.calculateVariety" />
         <label for="calculate-variety"> Show variety signature</label>