Skip to content

Latest commit

 

History

History
25 lines (20 loc) · 1.03 KB

README.md

File metadata and controls

25 lines (20 loc) · 1.03 KB
Raw

BWT Tunneling

This bundle of programs is part of the thesis

BWT Tunneling
Uwe Baier, 2020

The bundle consists of three parts:

  1. A suite to handle test data.
  2. Programs that show the application of tunneling in data compression.
  3. Programs that show the application of tunneling in sequence analysis.

General requirements

Installation

Every part requires its own programs, so you may read the README of each part. Apart from that, all parts require the Succinct Data Structure Library sdsl-lite by Simon Gog.

After installing sdsl lite, you can either

  • set up an environment variable called SDSLLITE that specifies the path to the library using the command export SDSLLITE="path/to/sdsllite/".
  • modify the file Make.helper in this directory such that the uppermost path points to the Make.helper file of your sdsl-lite installation.