NAMESPACE

# Generated by roxygen2: do not edit by hand

export(CLfeats)
export(bind_formal_tags)
export(cellTypeToGO)
export(cellTypeToGenes)
export(children_TAG)
export(cleanCLOnames)
export(common_classes)
export(connect_classes)
export(ctmarks)
export(cyclicSigset)
export(demoApp)
export(dropStop)
export(fastGrep)
export(findCommonAncestors)
export(getCellLineOnto)
export(getCellOnto)
export(getCellosaurusOnto)
export(getChebiLite)
export(getChebiOnto)
export(getDiseaseOnto)
export(getEFOOnto)
export(getGeneOnto)
export(getHCAOnto)
export(getLeavesFromTerm)
export(getOncotreeOnto)
export(getPATOnto)
export(getPROnto)
export(getUBERON_NE)
export(improveNodes)
export(label_TAG)
export(ldfToTerms)
export(liberalMap)
export(makeSelectInput)
export(make_graphNEL_from_ontology_plot)
export(map2prose)
export(mapOneNaive)
export(nomenCheckup)
export(onto_plot2)
export(onto_roots)
export(recognizedPredicates)
export(secLevGen)
export(selectFromMap)
export(seur3kTab)
export(siblings_TAG)
export(subset_descendants)
export(sym2CellOnto)
exportClasses(TermSet)
exportMethods(c)
exportMethods(show)
import("shiny", except=c("dataTableOutput", "renderDataTable"))
import(BiocFileCache)
import(Rgraphviz)
import(graph)
import(ontologyIndex)
importClassesFrom(S4Vectors,DataFrame)
importFrom(AnnotationDbi,select)
importFrom(Biobase,selectSome)
importFrom(DT,dataTableOutput)
importFrom(DT,renderDataTable)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,transmute)
importFrom(graph,addEdge)
importFrom(graph,adj)
importFrom(graph,nodes)
importFrom(igraph,subcomponent)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,show)
importFrom(ontologyIndex,get_descendants)
importFrom(ontologyPlot,onto_plot)
importFrom(stats,na.omit)
importFrom(utils,adist)
importFrom(utils,data)
importFrom(utils,read.delim)