From db7838dfabdb02282f3a4a2a9ddd3c03e2694d35 Mon Sep 17 00:00:00 2001
From: Kevin Day <kday@tamu.edu>
Date: Tue, 7 Mar 2023 08:45:17 -0600
Subject: [PATCH] VIVO 3828: Remove SDB in preparation to moving to new Jena.

There are only comments and properties to remove.
---
 .../resources/config/example.applicationSetup.n3   |  8 ++------
 .../resources/config/example.runtime.properties    | 14 ++++++--------
 .../webResources/WEB-INF/classes/log4j.properties  |  2 --
 3 files changed, 8 insertions(+), 16 deletions(-)

diff --git a/home/src/main/resources/config/example.applicationSetup.n3 b/home/src/main/resources/config/example.applicationSetup.n3
index 0acd91f0f1..a3b7b38e5a 100644
--- a/home/src/main/resources/config/example.applicationSetup.n3
+++ b/home/src/main/resources/config/example.applicationSetup.n3
@@ -85,14 +85,10 @@
 #    The TDB-based implementation is the default option. It reads its parameters
 #    from the runtime.properties file, for backward compatibility.
 #
-#    Other implementations are based on an SDB instance, a "standard" SPARQL
-#    endpoint, or a Virtuoso endpoint, with parameters as shown.
+#    Other implementations are a "standard" SPARQL endpoint or a Virtuoso
+#    endpoint, with parameters as shown.
 #
 
-#:sdbContentTripleSource
-#    a   vitroWebapp:triplesource.impl.sdb.ContentTripleSourceSDB ,
-#        vitroWebapp:modules.tripleSource.ContentTripleSource .
-
 :tdbContentTripleSource
     a   vitroWebapp:triplesource.impl.tdb.ContentTripleSourceTDB ,
         vitroWebapp:modules.tripleSource.ContentTripleSource ;
diff --git a/home/src/main/resources/config/example.runtime.properties b/home/src/main/resources/config/example.runtime.properties
index 0f22433b70..86c66fb5e7 100644
--- a/home/src/main/resources/config/example.runtime.properties
+++ b/home/src/main/resources/config/example.runtime.properties
@@ -56,8 +56,8 @@ argon2.memory = 1024
 argon2.time = 1000
 
   #
-  # NOTE: VitroConnection.DataSource.* properties are only used in conjuction with
-  #       an SDB triple store.
+  # NOTE: VitroConnection.DataSource.* properties are only used by OpenSocial for
+  #       SQL database interaction.
   #
   # The basic parameters for a database connection. Change the end of the
   # URL to reflect your database name (if it is not "vitrodb"). Change the username
@@ -152,21 +152,19 @@ selfEditing.idMatchingProperty = http://vivo.mydomain.edu/ns#networkId
 # VitroConnection.DataSource.pool.maxIdle = 10
 
 # -----------------------------------------------------------------------------
-# USING A DIFFERENT DATABASE
+# USING AN SQL DATABASE
 # -----------------------------------------------------------------------------
 
   #
   # Parameters to change in order to use VIVO with a database other than
-  # MySQL.
+  # MySQL. This may be required for OpenSocial.
   #
 # VitroConnection.DataSource.dbtype = MySQL
 # VitroConnection.DataSource.driver = com.mysql.jdbc.Driver
 # VitroConnection.DataSource.validationQuery = SELECT 1
 
-  # Note: the above parameters allow you to change the relational database that
-  # is used as the back end for Jena SDB. If you want to use a triple store
-  # other than SDB, you will need to edit applicationSetup.n3. See the
-  # installation instructions for more details.
+  # Note: you may need to edit applicationSetup.n3. See the installation
+  # instructions for more details.
 
 
 # -----------------------------------------------------------------------------
diff --git a/installer/webapp/src/main/webResources/WEB-INF/classes/log4j.properties b/installer/webapp/src/main/webResources/WEB-INF/classes/log4j.properties
index 5cdfd31cd8..88747e03f4 100644
--- a/installer/webapp/src/main/webResources/WEB-INF/classes/log4j.properties
+++ b/installer/webapp/src/main/webResources/WEB-INF/classes/log4j.properties
@@ -39,8 +39,6 @@ log4j.logger.edu.cornell.mannlib.vitro.webapp.servlet.setup.UpdateKnowledgeBase=
 log4j.logger.org.semanticweb.owlapi.rdf.rdfxml.parser=WARN
 
 # suppress odd warnings from libraries
-log4j.logger.org.apache.jena.sdb.layout2.LoaderTuplesNodes=FATAL
-log4j.logger.org.apache.jena.sdb.sql.SDBConnection=ERROR
 log4j.logger.org.openjena.riot=FATAL
 log4j.logger.org.apache.jena.riot=FATAL
 log4j.logger.org.directwebremoting=WARN