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Torque teno virus (TTV) is not a valid name #47

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cjcarlson opened this issue May 20, 2021 · 4 comments
Open

Torque teno virus (TTV) is not a valid name #47

cjcarlson opened this issue May 20, 2021 · 4 comments
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taxonomy
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First pass of NCB...

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@cjcarlson
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So, TTV's distinct genotypes have recently been split into a bunch of numbered species, with Torque teno virus 1 referring to the main human isolate (I believe). TTV is a fine catch-all for the NCBI taxonomy, but needs to be no-rank with genus Alphatorquevirus
@cjcarlson cjcarlson added bug Something isn't working taxonomy labels May 20, 2021
@cjcarlson cjcarlson added this to the First pass of NCBI fixes milestone May 26, 2021
@rorygibb
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For now I have added a manual fix in clovert_dev, ahead of any NCBI-side fixes: all instances of "Torque teno virus" as virus species name are now Anelloviridae>Alphatorquevirus>NA. This has been pushed so good to propagate into VIRION.

@cjcarlson
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You know I love to see that Rory

@cjcarlson cjcarlson reopened this May 28, 2021
@cjcarlson
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Messed up, Ryan still needs to look at this

@cjcarlson cjcarlson removed the bug Something isn't working label Aug 2, 2021
@cjcarlson
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confirmed still an issue

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@rorygibb @cjcarlson