diff --git a/CHANGELOG.md b/CHANGELOG.md
index 52a49de02..30b2a3c54 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -24,6 +24,9 @@ TODO add summary
 
 * `viash test`: Fix Docker id between build and test components not being consistent when using a custom Docker registry (PR #679).
 
+* `MainNSBuildNativeSuite`: Capture the error message when reading the configs so we can capture the expected warning message (PR #688).
+  While almost all tests were already cleanly capturing their expected warning/error messages, this one was still remaining, resulting in warnings being shown in the output.
+
 # Viash 0.9.0-RC2 (2024-02-23): Restructure the config and change some default values
 
 The `.functionality` layer has been removed from the config and all fields have been moved to the top layer.
diff --git a/src/test/scala/io/viash/e2e/ns_build/MainNSBuildNativeSuite.scala b/src/test/scala/io/viash/e2e/ns_build/MainNSBuildNativeSuite.scala
index 1fabf7bf5..7501b6356 100644
--- a/src/test/scala/io/viash/e2e/ns_build/MainNSBuildNativeSuite.scala
+++ b/src/test/scala/io/viash/e2e/ns_build/MainNSBuildNativeSuite.scala
@@ -10,6 +10,7 @@ import org.scalatest.funsuite.AnyFunSuite
 import java.io.File
 import java.nio.file.Paths
 import scala.io.Source
+import java.io.ByteArrayOutputStream
 
 class MainNSBuildNativeSuite extends AnyFunSuite with BeforeAndAfterAll{
   Logger.UseColorOverride.value = Some(false)
@@ -65,7 +66,12 @@ class MainNSBuildNativeSuite extends AnyFunSuite with BeforeAndAfterAll{
   for ((component, _, _, _) <- components) {
   test(s"Check whether particular keywords can be found in the usage with component $component") {
       val configFile = getClass.getResource(s"/testns/src/$component/config.vsh.yaml").getPath
-      val config = Config.read(configFile)
+      val errStream = new ByteArrayOutputStream()
+      val config = Console.withErr(errStream) {
+        Config.read(configFile)
+      }
+      val errString = errStream.toString
+      assert(errString.isEmpty() || errString.matches("Warning: The status of the component 'ns_power' is set to deprecated.\\s*"))
 
       val stdout =
         Exec.run(