diff --git a/src/busco/busco/test.sh b/src/busco/busco/test.sh index 064897e7..8c92f890 100644 --- a/src/busco/busco/test.sh +++ b/src/busco/busco/test.sh @@ -10,16 +10,12 @@ echo "$(busco --version 2>&1 | sed -n 's/BUSCO \([0-9.]*\)/\1/p')" --output_dir output echo ">> Checking output" -[ ! -f "output/short_summary.specific.stramenopiles_odb10.protein.fasta.json" ] && echo "specific_short_summary.json does not exist" && exit 1 -[ ! -f "output/short_summary.specific.stramenopiles_odb10.protein.fasta.txt" ] && echo "specific_short_summary.txt does not exist" && exit 1 [ ! -f "output/run_stramenopiles_odb10/full_table.tsv" ] && echo "full_table.tsv does not exist" && exit 1 [ ! -f "output/run_stramenopiles_odb10/missing_busco_list.tsv" ] && echo "missing_busco_list.tsv does not exist" && exit 1 [ ! -f "output/run_stramenopiles_odb10/short_summary.json" ] && echo "short_summary.json does not exist" && exit 1 [ ! -f "output/run_stramenopiles_odb10/short_summary.txt" ] && echo "short_summary.txt does not exist" && exit 1 echo ">> Checking if output is empty" -[ ! -s "output/short_summary.specific.stramenopiles_odb10.protein.fasta.json" ] && echo "specific_short_summary.json is empty" && exit 1 -[ ! -s "output/short_summary.specific.stramenopiles_odb10.protein.fasta.txt" ] && echo "specific_short_summary.txt is empty" && exit 1 [ ! -s "output/run_stramenopiles_odb10/full_table.tsv" ] && echo "full_table.tsv is empty" && exit 1 [ ! -s "output/run_stramenopiles_odb10/missing_busco_list.tsv" ] && echo "missing_busco_list.tsv is empty" && exit 1 [ ! -s "output/run_stramenopiles_odb10/short_summary.json" ] && echo "short_summary.json is empty" && exit 1