mothur.spec

Name:           mothur
Version:        1.21.1
Release:        3%{?dist}
Summary:	Computational microbial ecology tool 

Group:		Applications/Engineering
License:	GPLv3
URL:		http://www.%{name}.org
Source0:	http://www.%{name}.org/w/images/6/64/Mothur.1.21.1.zip
patch0:		%{name}-makefile.patch
BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

BuildRequires:	ncurses-devel
BuildRequires:	readline-devel


%description

The mothur project was initiated by Dr. Patrick Schloss and his
software development team in the Department of Microbiology &
Immunology at The University of Michigan. This project seeks to
develop a single piece of open-source, expandable software to fill the
bioinformatics needs of the microbial ecology community. The authors
have incorporated the functionality of dotur, sons, treeclimber,
s-libshuff, unifrac, and much more. In addition to improving the
flexibility of these algorithms, they have added a number of other
features including calculators and visualization tools.

%prep
#Deal with mistakenly included OS X files
%setup -q   -n Mothur.source
rm -rf __MACOSX* .DS_Store
%patch0 -p1

%build

#makefile doesn't support SMP builds
make  

%install
rm -rf %{buildroot}

mkdir -p %{buildroot}%{_bindir}
install -m 0755 %{name} %{buildroot}%{_bindir}

%clean
rm -rf %{buildroot}


%files
%defattr(-,root,root,-)
%doc LICENSE
%{_bindir}/%{name}


%changelog
* Tue Aug 23 2011 Adam Huffman <bloch@verdurin.com> - 1.21.1-3
- various style cleanups

* Fri Aug 19 2011 Adam Huffman <bloch@verdurin.com> - 1.21.1-2
- patch makefile to fix compilation flags

* Fri Aug 19 2011 Adam Huffman <bloch@verdurin.com> - 1.21.1-1
- update to upstream 1.21.1

* Fri Jul 29 2011 Adam Huffman <bloch@verdurin.com> - 1.21.0-1
- update to upstream release 1.21.0

* Tue Jul 19 2011 Adam Huffman <bloch@verdurin.com> - 1.20.3-1
- initial version