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Contrast-FEL results interpretation in hyphy #1780

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geofrunz opened this issue Dec 22, 2024 · 0 comments
Open

Contrast-FEL results interpretation in hyphy #1780

geofrunz opened this issue Dec 22, 2024 · 0 comments

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@geofrunz
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geofrunz commented Dec 22, 2024

Dear all,

Sorry for the basic question. I am trying to use Contrast-FEL in HyPhy for better annotation of the tree branches. However, when I get the results, I cannot figure out in which dataset beta is greater.

I tried using the reference dataset provided in https://hyphy.org/methods/other/contrast-fel/, and while the values match, in the local version the larger values are always reported in the right-hand column, regardless of whether they refer to the test or reference dataset.
image
this is different compared to the table provided in the tutorial (https://hyphy.org/methods/other/contrast-fel/)
Is there a way to clarify this?
I'm using HYPHY 2.5.64(MP)
Thank you in advance!

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