Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

"Not supported by data" and " Collapsed rate class " in the log file #61

Open
aaannaw opened this issue Nov 26, 2024 · 0 comments
Open

Comments

@aaannaw
Copy link

aaannaw commented Nov 26, 2024

Dear author,
I noticed the log file showed the information:

  • The following rate distribution was inferred for test branches

|          Selection mode           |     dN/dS     |Proportion, %|               Notes               |
|-----------------------------------|---------------|-------------|-----------------------------------|
|        Negative selection         |     0.000     |   88.606    |                                   |
|        Negative selection         |     0.999     |    0.000    |       Not supported by data       |
|      Diversifying selection       |     1.000     |   11.394    |       Collapsed rate class        |

* The following rate distribution was inferred for **reference** branches

|          Selection mode           |     dN/dS     |Proportion, %|               Notes               |
|-----------------------------------|---------------|-------------|-----------------------------------|
|        Negative selection         |     0.000     |   88.606    |                                   |
|        Negative selection         |     0.001     |    0.000    |       Not supported by data       |
|      Diversifying selection       |     1.911     |   11.394    |                                   |

What does mean the information for "Not supported by data" and "Collapsed rate class" ? Should I trust the relaxation or intensification result (K value) and the dN/dS value in the json output file? Could you give me any suggestions?

Best wishes,
Na Wan

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant