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Dear author,
I am running the command: hyphy relax --alignment /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/07.deletestopcodon/evm.model.ptg000001l.100.fa --tree /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/00.tree/evm.model.ptg000001l.100.phy.treefile.mark --test FG2 --reference FG1 --output /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/01.relax.out/evm.model.ptg000001l.100.json > /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/01.relax.out/evm.model.ptg000001l.100.relax.log 2>&1;
My tree : (Fan{FG1},((((((((Hcr,Cgu),(Tsw,Pty)),Hgl{FG1}),(Gca{FG2},Bsu{FG2})),Cho{FG1}),Fme{FG1}),Fda{FG1}),Fdm{FG1}),Fmi{FG1});
My alignment file:
However, I only got the log file but can not generate the json file. The log file looks like normal and is attached. evm.model.ptg000001l.100.relax.log
Could you give me any suggestions?
Looking forward with your reply.
Best wishes,
Na Wan
The text was updated successfully, but these errors were encountered:
aaannaw
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Only output log file but zan not genenrate the json file
Only output log file but can not genenrate the json file
Nov 10, 2024
Dear author,
I am running the command:
hyphy relax --alignment /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/07.deletestopcodon/evm.model.ptg000001l.100.fa --tree /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/00.tree/evm.model.ptg000001l.100.phy.treefile.mark --test FG2 --reference FG1 --output /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/01.relax.out/evm.model.ptg000001l.100.json > /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/01.relax.out/evm.model.ptg000001l.100.relax.log 2>&1
;My tree :
(Fan{FG1},((((((((Hcr,Cgu),(Tsw,Pty)),Hgl{FG1}),(Gca{FG2},Bsu{FG2})),Cho{FG1}),Fme{FG1}),Fda{FG1}),Fdm{FG1}),Fmi{FG1});
My alignment file:
However, I only got the log file but can not generate the json file. The log file looks like normal and is attached.
evm.model.ptg000001l.100.relax.log
Could you give me any suggestions?
Looking forward with your reply.
Best wishes,
Na Wan
The text was updated successfully, but these errors were encountered: