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Only output log file but can not genenrate the json file #58

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aaannaw opened this issue Nov 10, 2024 · 0 comments
Open

Only output log file but can not genenrate the json file #58

aaannaw opened this issue Nov 10, 2024 · 0 comments

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@aaannaw
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aaannaw commented Nov 10, 2024

Dear author,
I am running the command: hyphy relax --alignment /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/07.deletestopcodon/evm.model.ptg000001l.100.fa --tree /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/00.tree/evm.model.ptg000001l.100.phy.treefile.mark --test FG2 --reference FG1 --output /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/01.relax.out/evm.model.ptg000001l.100.json > /data/01/p1/user157/Bathyergidae-sociaty/2024812.newcactus/03.proteincoding-selected-analysis/01.getgene/13.hyphy/02.relax/01.relax.out/evm.model.ptg000001l.100.relax.log 2>&1;
My tree : (Fan{FG1},((((((((Hcr,Cgu),(Tsw,Pty)),Hgl{FG1}),(Gca{FG2},Bsu{FG2})),Cho{FG1}),Fme{FG1}),Fda{FG1}),Fdm{FG1}),Fmi{FG1});
My alignment file:
image
However, I only got the log file but can not generate the json file. The log file looks like normal and is attached.
evm.model.ptg000001l.100.relax.log
Could you give me any suggestions?
Looking forward with your reply.
Best wishes,
Na Wan

@aaannaw aaannaw changed the title Only output log file but zan not genenrate the json file Only output log file but can not genenrate the json file Nov 10, 2024
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