venv_config.sh

#! /bin/bash

. settings.sh

MYDIR="$(dirname "$(realpath "$0")")"

# Modify $PYTHONPATH in .venv
sudo -u galaxy -H sh -c "echo export GALAXY_LIB=${GALAXYTREE}/lib >> ${GALAXYTREE}/.venv/bin/activate"
sudo -u galaxy -H sh -c "echo export PYTHONPATH='$'GALAXY_LIB:${GALAXYTREE}/lib/usit/python >> ${GALAXYTREE}/.venv/bin/activate"


read -p "Install module for project report generation (PDF)? [yN] " installpdfreport

if [ "${installpdfreport}" == "y" ]; then
    # Deploy PDF modules needed to print the pdf reports
    sudo -u galaxy -H sh -c "${MYDIR}/deploy-pdf-modules.sh"
fi