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When I go through the "run_kma_example.R" script provided, it looks like the pipeline is only designed for cohort/multiple samples/multiple conditions analysis. But are there ways to implement the pipeline for single tumour sample per patient?
And, I wonder from where "decoder_all.txt" file came from and what is the content of this file? Does it contain the input file structure mentioned in kma? i.e;
Hi Claire,
When I go through the "run_kma_example.R" script provided, it looks like the pipeline is only designed for cohort/multiple samples/multiple conditions analysis. But are there ways to implement the pipeline for single tumour sample per patient?
And, I wonder from where "decoder_all.txt" file came from and what is the content of this file? Does it contain the input file structure mentioned in kma? i.e;
experiment
|____conditionA
| |____conditionA1
| |____conditionA2
| |____conditionA3
|____conditionB
| |____conditionB1
| |____conditionB2
| |____conditionB3
Regards,
Rajendra
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