diff --git a/cpt.yaml b/cpt.yaml
index e508053b..3d0ecd1a 100644
--- a/cpt.yaml
+++ b/cpt.yaml
@@ -63,10 +63,11 @@ tools:
   - name: cpt_lipory
     owner: cpt
     tool_panel_section_label: Annotation
-
+    
   - name: cpt_intersect_adjacent
     owner: cpt
     tool_panel_section_label: Annotation
+## deprecated tool, replaced by cpt_intersect_adj
 
   - name: cpt_related_genomes_nuc
     owner: cpt
@@ -75,6 +76,7 @@ tools:
   - name: cpt_related_genomes_prot
     owner: cpt
     tool_panel_section_label: Phylogenetics
+## deprecated tool, replaced by cpt_protein_blast_grouping
 
   - name: cpt_xmfa_to_table
     owner: cpt
@@ -127,3 +129,16 @@ tools:
   - name: cpt_fasta_translate
     owner: cpt
     tool_panel_section_label: Annotation
+    
+  - name: cpt_protein_blast_grouping
+    owner: cpt
+    tool_panel_section_label: Annotation
+
+  - name: cpt_prophage_relatedness
+    owner: cpt
+    tool_panel_section_label: Annotation
+
+  - name: cpt_intersect_adj
+    owner: cpt
+    tool_panel_section_label: Annotation
+
diff --git a/cpt.yaml.lock b/cpt.yaml.lock
index 5b9e4320..645d2052 100644
--- a/cpt.yaml.lock
+++ b/cpt.yaml.lock
@@ -182,3 +182,18 @@ tools:
   revisions:
   - cb42bee49abb
   tool_panel_section_label: Annotation
+- name: cpt_protein_blast_grouping
+  owner: cpt
+  revisions:
+  - 11701cc63084
+  tool_panel_section_label: Annotation
+- name: cpt_prophage_relatedness
+  owner: cpt
+  revisions:
+  - 7ba8b1f0fdf0
+  tool_panel_section_label: Annotation
+- name: cpt_intersect_adj
+  owner: cpt
+  revisions:
+  - 00aab5199327
+  tool_panel_section_label: Annotation