From b46f350dc55b29ebdf5ac91961e82b8592e0785f Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Sat, 7 Dec 2024 23:27:57 +0000 Subject: [PATCH] Updated trusted tools (2024-12-07) --- bgruening.yaml.lock | 2 ++ ecology.yaml.lock | 5 ++++ europe-custom.yaml.lock | 1 + tools_galaxyp.yaml.lock | 1 + tools_iuc.yaml.lock | 63 +++++++++++++++++++++++++++++++++++++++++ 5 files changed, 72 insertions(+) diff --git a/bgruening.yaml.lock b/bgruening.yaml.lock index ad7568e0..adaa44d7 100644 --- a/bgruening.yaml.lock +++ b/bgruening.yaml.lock @@ -157,6 +157,7 @@ tools: - 3ee0ef312022 - 8d4f03b5fe9d - cb8dfd28c16f + - cd11366d92cf - cd256484eb1a - de24438c9988 - e27815e82dd4 @@ -1049,6 +1050,7 @@ tools: revisions: - 21ee409e6cde - 3e22bda128be + - 7939ae8c5fd5 tool_panel_section_label: Machine Learning - name: graphmap_align owner: bgruening diff --git a/ecology.yaml.lock b/ecology.yaml.lock index b2882b28..69c3b90a 100644 --- a/ecology.yaml.lock +++ b/ecology.yaml.lock @@ -462,6 +462,11 @@ tools: revisions: - 828c02027180 tool_panel_section_label: Climate Analysis +- name: harmonize_insitu_to_netcdf + owner: ecology + revisions: + - 15260949227d + tool_panel_section_label: Climate Analysis - name: venn_list owner: peterjc revisions: diff --git a/europe-custom.yaml.lock b/europe-custom.yaml.lock index 59bb2fd9..04f9201c 100644 --- a/europe-custom.yaml.lock +++ b/europe-custom.yaml.lock @@ -1167,6 +1167,7 @@ tools: - 41929aa1e7f3 - 44959aa06aeb - 4df95e2d7f61 + - 53255f6eecfc - 5ec75f5dae3c - 79de45b5069b - 7ed2edc1337f diff --git a/tools_galaxyp.yaml.lock b/tools_galaxyp.yaml.lock index 6537be01..f6afa2ed 100644 --- a/tools_galaxyp.yaml.lock +++ b/tools_galaxyp.yaml.lock @@ -224,6 +224,7 @@ tools: - 6153e8ada1ee - 9b61227976d6 - 9ec469ff191a + - ab6c14374bc0 - cc5ccfa8ee28 - dd4ba10d0c45 tool_panel_section_label: Convert Formats diff --git a/tools_iuc.yaml.lock b/tools_iuc.yaml.lock index f339ef9d..6f31e8bf 100644 --- a/tools_iuc.yaml.lock +++ b/tools_iuc.yaml.lock @@ -352,6 +352,10 @@ tools: revisions: - c15e34e39e09 tool_panel_section_label: Annotation +- name: data_manager_groot_database_downloader + owner: iuc + revisions: + - 0c255951902a - name: gubbins owner: iuc revisions: @@ -924,6 +928,7 @@ tools: - name: fastk_fastk owner: iuc revisions: + - 8049cb5537b7 - 87f4b4dced3e - 9f8c786bd424 - ff827f983bbb @@ -1844,6 +1849,11 @@ tools: - f87ac61981f0 - f97743d52b87 tool_panel_section_label: Evolution +- name: quicktree + owner: iuc + revisions: + - 1e89a460d1bd + tool_panel_section_label: Evolution - name: mutate_snp_codon owner: devteam revisions: @@ -3271,6 +3281,7 @@ tools: - 952abbc4b1de - 989cec209ba2 - b53973719d7b + - c3ffb2c1e314 - d6f5e51e97ec - ee745fbe9f14 - fb7068d30ec9 @@ -3281,6 +3292,7 @@ tools: revisions: - 126abc4b03f1 - 1e52af48d34e + - 45828071edc3 - 57aeaf6b237d - 7ec5229e2a19 - 8c5cecbfc3aa @@ -3295,6 +3307,7 @@ tools: owner: bgruening revisions: - 163fd744e235 + - 1a31e75e979e - 23b8d6b8960c - cab616fe7e64 tool_panel_section_label: HiCExplorer @@ -3307,6 +3320,7 @@ tools: - 43c24d0bd463 - 46793007f090 - 61e2d34c5b99 + - '920526260066' - ac7999229ac6 - ae8bf5420df2 - b9ab56aecd18 @@ -3325,6 +3339,7 @@ tools: - a63e9713c39d - b892fa1fcaec - db4a82804126 + - f6a169b5e43b - fadd03fbc4f5 - feb7f62a0ff9 tool_panel_section_label: HiCExplorer @@ -3342,11 +3357,13 @@ tools: - 6ef732512682 - 7668fac6cc3a - f8320df1866b + - ff1af7bac1cb tool_panel_section_label: HiCExplorer - name: hicexplorer_chicviewpoint owner: bgruening revisions: - 0dabfd9a496b + - 37125838e360 - 40fee49bc6c3 - 68c92dfd03d7 - 6d76e532b669 @@ -3363,6 +3380,7 @@ tools: revisions: - 51447a1d38ed - 628259b7ffb4 + - 6f8debcf2ac9 - 7fe1a401d833 - 83570b36593e - 91abc3b2e948 @@ -3386,12 +3404,14 @@ tools: - cc52e4ded146 - cd29c9a2ad55 - e06265d204f6 + - e8760fc0e29b - ea297a9c6f11 tool_panel_section_label: HiCExplorer - name: hicexplorer_hicaggregatecontacts owner: bgruening revisions: - 1b25346775db + - 30677e95bc89 - 4ba4b59dcff1 - 63c8377c58b3 - 7066a1eda176 @@ -3410,6 +3430,7 @@ tools: revisions: - 03d7978293fe - 2818b428a5c5 + - 3240e8a7c54f - 3dafb9693b8c - 4b6a36c18e5e - 8a11d70b6cd8 @@ -3435,6 +3456,7 @@ tools: - 9edf8894a22d - a4c13ddcc8ee - c657edbea349 + - d9967770de96 - ed2cca6b5de4 tool_panel_section_label: HiCExplorer - name: hicexplorer_hiccomparematrices @@ -3445,6 +3467,7 @@ tools: - 41aab2463ca4 - 4f9305d3bb34 - 55b4b8bc250d + - 5dd1aae12f03 - 80abd5e2922a - 826a6ac07f93 - a0ab04565c73 @@ -3462,6 +3485,7 @@ tools: - 4401ed529d2c - 536a6f0d260c - 7eaa4f72691f + - 87eb9c58cd19 - 8d764e8acdf5 - a315574104c6 - a9b3dfde1f31 @@ -3477,6 +3501,7 @@ tools: - 2f62a87d4017 - 3b15581e7ca7 - 3e598b8e72e7 + - 574f295b5ba4 - 835d4d727688 - a83732c79949 - abf2ec674f17 @@ -3492,6 +3517,7 @@ tools: - 5443b2b1165f - 62b720dceb56 - 92fc291ceb1a + - 937b7b9832d0 - 9949f055db84 - bc027a1c0952 - c543c41377dd @@ -3504,6 +3530,7 @@ tools: - name: hicexplorer_hiccorrelate owner: bgruening revisions: + - 0f5786ffa10d - 1099d84fcc21 - 2786a931cad2 - 2b4d6a8dab36 @@ -3526,6 +3553,7 @@ tools: - 1119cdd14ddb - 1cf50a7d0a05 - 2d1f9759fa0e + - 4375e25de06a - 5759cd7db0d1 - bf9379529c3e - c3f9037423bd @@ -3537,6 +3565,7 @@ tools: owner: bgruening revisions: - 07dd436ea686 + - 4977f65da0ff - 5dfba24d7bdd - 608538d083a2 - 77d8e0fd162a @@ -3555,6 +3584,7 @@ tools: - 972dcccb5bbc - aa829050d061 - ad852622d00a + - f0b1bd38745a - f1b3902f8baf - fc0667d83f7c tool_panel_section_label: HiCExplorer @@ -3564,6 +3594,7 @@ tools: - 116ddd1627cd - 11de0d28ab30 - 1d9b575fe97d + - 478aacfbaa37 - 5746d61f0a91 - 6b7987d22eab - 755df866ad0c @@ -3578,6 +3609,7 @@ tools: - name: hicexplorer_hichyperoptdetectloops owner: bgruening revisions: + - 3e5c86c2f80d - 409396ea5cf0 - 7f7c6ead2d0d - 89fb1aab755b @@ -3593,6 +3625,7 @@ tools: - 615e9d59a682 - 708e1b8eff5c - 782e3ae92bc6 + - 7fbd6feba1ca - a83e4b0074a3 - b0f33533181d - ca97d2b2b59e @@ -3604,6 +3637,7 @@ tools: revisions: - 32173084d53f - 55b013e59018 + - 908fa330b93b - c261b6b05ee3 tool_panel_section_label: HiCExplorer - name: hicexplorer_hicmergedomains @@ -3614,11 +3648,13 @@ tools: - 6f725a516914 - b376ef118807 - b6b8c8672756 + - febfddb0b3e8 tool_panel_section_label: HiCExplorer - name: hicexplorer_hicmergeloops owner: bgruening revisions: - 1511a8ebe906 + - 1d9799f4b854 - 25332cfeac05 - 420868438a99 - 49b82255b72f @@ -3640,6 +3676,7 @@ tools: - 90645548f8cc - 977dc15add20 - 9b7840d527be + - 9d93c8fbe0a6 - 9e357a8b2ec3 - a1cf508bff84 - c5280c9117f3 @@ -3654,6 +3691,7 @@ tools: - 2aa5b6b65197 - 483e507c8d42 - 4f36f2d51d33 + - 5e83c077e31d - 6d042c96aceb - 7f7139b8a671 - 8ad23dfdaabb @@ -3678,12 +3716,14 @@ tools: - c7f55f65b449 - d5a86de86846 - ebb9b94138c1 + - f86ca478c6af tool_panel_section_label: HiCExplorer - name: hicexplorer_hicplotaverageregions owner: bgruening revisions: - 0dff8b5011c0 - 2371fad10021 + - 3f1b286a5c34 - 5ae69a0a33bf - 5fb461d15c31 - 8f4b98b0f9a9 @@ -3703,6 +3743,7 @@ tools: - 34dc1acfcc62 - 6326cd29c1c3 - 6abd5817e0cd + - 89cfe7de541b - 8c1ac76d7063 - a4a413dcc59d - ace4cbd036c4 @@ -3714,6 +3755,7 @@ tools: - name: hicexplorer_hicplotmatrix owner: bgruening revisions: + - 025a128652dc - 12d51d7be66f - 40b33e101621 - 4d2f071002b1 @@ -3731,6 +3773,7 @@ tools: - name: hicexplorer_hicplotsvl owner: bgruening revisions: + - 1602cc5b673c - 1923cc7e6bc2 - 279fb179dae7 - 337705015ee8 @@ -3755,6 +3798,7 @@ tools: - 84d4b83f092a - 88208ca6cb90 - 8d203e74869b + - a10fce08c2dc - b637a1e3cb14 - d5c24ac2da6e - e285920f8585 @@ -3771,6 +3815,7 @@ tools: - 7679948176ef - 909125ec301f - 9c5078f3926b + - b13e7a200525 - b599d3000966 - b8755bb5bc56 - ea8fb5e899e8 @@ -3788,6 +3833,7 @@ tools: - 759f6bb1432f - c08c07412bd0 - c4ee66c35eb6 + - d74cf4a61d65 - d78ae621fc63 - e89bc5e38823 - f81750434d70 @@ -3815,6 +3861,7 @@ tools: - ae9cc6dbfaca - b3553a0a5dcf - dc25d1f9927b + - df64cc4dfb4d - e8dfe346a207 - f36828ebdc54 - ff11c08dc0d0 @@ -3832,6 +3879,7 @@ tools: - 662109a754b5 - bccefbea9b8d - cef9fb4ece1c + - d890828ab02a - f011486cbaaa tool_panel_section_label: HiCExplorer - name: schicexplorer_schicadjustmatrix @@ -4179,6 +4227,7 @@ tools: - 41929aa1e7f3 - 44959aa06aeb - 4df95e2d7f61 + - 53255f6eecfc - 5ec75f5dae3c - 79de45b5069b - 7ed2edc1337f @@ -4200,6 +4249,7 @@ tools: - 13022c3d3076 - 178bdbdb6d24 - 1cd2511a396e + - 381a32c51141 - 3a1253ee137b - 42ce70172b72 - 45795f582ae9 @@ -4817,6 +4867,7 @@ tools: revisions: - 18517edb4733 - 1c9715cef808 + - 3a89c3f99f3d - 4d89978c6188 - 5b5a7af9fbb4 - 63f86089423e @@ -4921,6 +4972,7 @@ tools: revisions: - 04144473e59e - 073608a50ac3 + - 1770d188f72d - 1937c2b4da7a - 1bc3657cd694 - 5b752525bd6f @@ -4942,6 +4994,11 @@ tools: - d943081510da - f74c56549143 tool_panel_section_label: Metagenomic Analysis +- name: dada2_primercheck + owner: iuc + revisions: + - 74ec28dbdf17 + tool_panel_section_label: Metagenomic Analysis - name: das_tool owner: iuc revisions: @@ -5703,11 +5760,13 @@ tools: - name: phyloseq_from_biom owner: iuc revisions: + - 1feea247d08a - c0101c72b8af tool_panel_section_label: Metagenomic Analysis - name: phyloseq_from_dada2 owner: iuc revisions: + - 40ebae5bbe51 - 46a99bd1f10e - 87064cb77a52 - b85ba18a8f36 @@ -5717,11 +5776,13 @@ tools: revisions: - 11d43fa12aab - 92e77800ef2c + - c35e0075c7a2 - dfe800a3faaf tool_panel_section_label: Metagenomic Analysis - name: phyloseq_plot_richness owner: iuc revisions: + - 1a6c2cc92c6e - 1ff178d1757e - 92b82deaaed1 - fb7c4bbe8994 @@ -11870,6 +11931,7 @@ tools: revisions: - 3c19c84fbce2 - 78df8fc2b3ab + - a40dd4fd3096 - d9965e143053 tool_panel_section_label: Variant Calling - name: vardict_java @@ -12479,6 +12541,7 @@ tools: - name: data_manager_mapseq owner: iuc revisions: + - 19ef193d1316 - 23511530b8fd - 4cd97cc67061 - dbf2735e8480