-
Notifications
You must be signed in to change notification settings - Fork 130
/
eirene.yaml
244 lines (185 loc) · 5.67 KB
/
eirene.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
---
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: recetox_aplcms_generate_feature_table
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_aplcms_recover_weaker_signals
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_aplcms_correct_time
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_aplcms_compute_clusters
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_aplcms_remove_noise
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_aplcms_merge_known_table
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_aplcms_compute_template
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_aplcms_align_features
owner: recetox
tool_panel_section_label: Metabolomics
- name: rmassbank
owner: recetox
tool_panel_section_label: Metabolomics
- name: biotransformer
owner: recetox
tool_panel_section_label: Metabolomics
- name: msmetaenhancer
owner: recetox
tool_panel_section_label: Metabolomics
- name: riassigner
owner: recetox
tool_panel_section_label: Metabolomics
- name: ramclustr
owner: recetox
tool_panel_section_label: Metabolomics
- name: ramclustr_define_experiment
owner: recetox
tool_panel_section_label: Metabolomics
- name: recetox_xmsannotator_advanced
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_convert
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_add_key
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_remove_key
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_filtering
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_remove_spectra
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_fingerprint_similarity
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_formatter
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_metadata_export
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_metadata_match
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_networking
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_similarity
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_spectral_similarity
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_split
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_subsetting
owner: recetox
tool_panel_section_label: Metabolomics
- name: matchms_metadata_merge
owner: recetox
tool_panel_section_label: Metabolomics
- name: waveica
owner: recetox
tool_panel_section_label: Metabolomics
- name: xtb_molecular_optimization
owner: recetox
tool_panel_section_label: ChemicalToolBox
- name: rem_complex
owner: recetox
tool_panel_section_label: ChemicalToolBox
- name: recetox_msfinder
owner: recetox
tool_panel_section_label: Metabolomics
- name: qcxms_neutral_run
owner: recetox
tool_panel_section_label: ChemicalToolBox
- name: qcxms_production_run
owner: recetox
tool_panel_section_label: ChemicalToolBox
- name: qcxms_getres
owner: recetox
tool_panel_section_label: ChemicalToolBox
- name: use_theoretical_mz_annotations
owner: recetox
tool_panel_section_label: Metabolomics
- name: rename_annotated_feature
owner: recetox
tool_panel_section_label: Metabolomics
- name: assign_ri_from_comment
owner: recetox
tool_panel_section_label: Metabolomics
- name: isolib
owner: recetox
tool_panel_section_label: Metabolomics
- name: gc_derivatization
owner: recetox
tool_panel_section_label: Metabolomics
- name: xcms_plot_raw
owner: workflow4metabolomics
tool_panel_section_label: Metabolomics
- name: xcms_plot_eic
owner: workflow4metabolomics
tool_panel_section_label: Metabolomics
- name: spec2vec_similarity
owner: recetox
tool_panel_section_label: Metabolomics
- name: spec2vec_training
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_snplot
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_histnoise
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_kmdnoise
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_isofiltr
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_mfassign
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_mfassigncho
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_recal
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_recallist
owner: recetox
tool_panel_section_label: Metabolomics
- name: mfassignr_findrecalseries
owner: recetox
tool_panel_section_label: Metabolomics
- name: rcx_tk
owner: recetox
tool_panel_section_label: Metabolomics
- name: target_screen
owner: recetox
tool_panel_section_label: Metabolomics
- name: ms2deepscore_config_generator
owner: recetox
tool_panel_section_label: Metabolomics
- name: ms2deepscore_similarity
owner: recetox
tool_panel_section_label: Metabolomics
- name: ms2deepscore_training
owner: recetox
tool_panel_section_label: Metabolomics