diff --git a/_posts/2024-11-20-tool-updates.md b/_posts/2024-11-20-tool-updates.md new file mode 100644 index 000000000..a804fd38c --- /dev/null +++ b/_posts/2024-11-20-tool-updates.md @@ -0,0 +1,40 @@ +--- +site: freiburg +title: 'Galaxy Australia tool updates 2024-11-20' +tags: [tools] +supporters: + - galaxyaustralia + - melbinfo + - qcif +--- + + + + +### Tools updated + +| Section | Tool | +|---------|-----| +| **Annotation** | snpeff [c7275bd8b4d6](https://toolshed.g2.bx.psu.edu/view/iuc/snpeff/c7275bd8b4d6)
tbprofiler [8cb134b8c1a5](https://toolshed.g2.bx.psu.edu/view/iuc/tbprofiler/8cb134b8c1a5) | +| **Assembly** | blobtoolkit [392811378515](https://toolshed.g2.bx.psu.edu/view/bgruening/blobtoolkit/392811378515)
pretext_map [c6cec5ab35c1](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_map/c6cec5ab35c1) | +| **BB Tools** | bbtools_bbduk [d58c27d2c5a7](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbduk/d58c27d2c5a7)
bbtools_bbmerge [1bb2b5b52030](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmerge/1bb2b5b52030)
bbtools_tadpole [ce13b4678f18](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_tadpole/ce13b4678f18) | +| **FASTA/FASTQ** | fastp [a626e8c0e1ba](https://toolshed.g2.bx.psu.edu/view/iuc/fastp/a626e8c0e1ba) | +| **Graph/Display Data** | pretext_snapshot [26f2fe7e53a1](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_snapshot/26f2fe7e53a1) | +| **Metabolomics** | matchms_add_key [a5d41764722d](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_add_key/a5d41764722d)
matchms_convert [9e83636da9d3](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/9e83636da9d3)
matchms_filtering [83c4b4359ac4](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/83c4b4359ac4)
matchms_fingerprint_similarity [fd890f162ce6](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/fd890f162ce6)
matchms_formatter [a5a5b147da70](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/a5a5b147da70)
matchms_metadata_export [8832425b1ff6](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/8832425b1ff6)
matchms_metadata_match [330b0dfae8da](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/330b0dfae8da)
matchms_metadata_merge [1fd950c5586a](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/1fd950c5586a)
matchms_networking [f04b378325e5](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/f04b378325e5)
matchms_remove_key [fbdb2ae524df](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_key/fbdb2ae524df)
matchms_remove_spectra [d50ce2f51fc0](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_spectra/d50ce2f51fc0)
matchms_spectral_similarity [7ba589b01dbc](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/7ba589b01dbc)
matchms_split [ea6c5636c0cf](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/ea6c5636c0cf)
matchms_subsetting [5bbd1a8404f5](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/5bbd1a8404f5) | +| **Metagenomic Analysis** | polypolish [915637bd1d1a](https://toolshed.g2.bx.psu.edu/view/iuc/polypolish/915637bd1d1a) | +| **Variant Calling** | sniffles [ceff2f6a5368](https://toolshed.g2.bx.psu.edu/view/iuc/sniffles/ceff2f6a5368) |