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+---
+site: freiburg
+title: 'Galaxy Australia tool updates 2024-09-11'
+tags: [tools]
+supporters:
+    - galaxyaustralia
+    - melbinfo
+    - qcif
+---
+
+
+<style>
+  table {
+    width: 100%;
+    margin: 10px 20px;
+  }
+  table th {
+    display: none;
+  }
+  td {
+    padding: 3px 5px;
+  }
+  tr td:nth-child(1) {
+    vertical-align: top;
+    width: 25%;
+  }
+</style>
+
+### Tools installed
+
+| Section | Tool |
+|---------|-----|
+| **Annotation** | prodigal [91791b6ecd38](https://toolshed.g2.bx.psu.edu/view/iuc/prodigal/91791b6ecd38)<br/>sanntis_marine [9d689f8c9ce4](https://toolshed.g2.bx.psu.edu/view/ecology/sanntis_marine/9d689f8c9ce4) |
+| **Nanopore** | clair3 [3843a30053ee](https://toolshed.g2.bx.psu.edu/view/iuc/clair3/3843a30053ee) |
+| **Proteomics** | metanovo [d6dcd3173bdf](https://toolshed.g2.bx.psu.edu/view/galaxyp/metanovo/d6dcd3173bdf)<br/>pepquery2 [c32806a80862](https://toolshed.g2.bx.psu.edu/view/galaxyp/pepquery2/c32806a80862) |
+| **Single-cell** | sceasy_convert [2062be7efc84](https://toolshed.g2.bx.psu.edu/view/iuc/sceasy_convert/2062be7efc84) |
+
+### Tools updated
+
+| Section | Tool |
+|---------|-----|
+| **Annotation** | bakta [d77802fe76f7](https://toolshed.g2.bx.psu.edu/view/iuc/bakta/d77802fe76f7)<br/>funannotate_compare [0418d28136de](https://toolshed.g2.bx.psu.edu/view/iuc/funannotate_compare/0418d28136de) |
+| **Assembly** | rnaquast [f73ab5187eed](https://toolshed.g2.bx.psu.edu/view/iuc/rnaquast/f73ab5187eed) |
+| **Mapping** | rna_starsolo [45795f582ae9](https://toolshed.g2.bx.psu.edu/view/iuc/rna_starsolo/45795f582ae9) |
+| **Metagenomic Analysis** | merge_metaphlan_tables [3cc4a60615c0](https://toolshed.g2.bx.psu.edu/view/iuc/merge_metaphlan_tables/3cc4a60615c0) |
+| **Proteomics** | openms_decoydatabase [06cca574e337](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_decoydatabase/06cca574e337)<br/>openms_xmlvalidator [ad2ba3a95a02](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xmlvalidator/ad2ba3a95a02) |
+| **RNA-seq** | rgrnastar [4014de1b6daf](https://toolshed.g2.bx.psu.edu/view/iuc/rgrnastar/4014de1b6daf)<br/>edger [ae2aad0a6d50](https://toolshed.g2.bx.psu.edu/view/iuc/edger/ae2aad0a6d50) |
+| **SAM/BAM** | samtools_view [2dce91e11ca7](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_view/2dce91e11ca7)<br/>bam_to_sam [3c661e57a88f](https://toolshed.g2.bx.psu.edu/view/devteam/bam_to_sam/3c661e57a88f)<br/>sam_to_bam [0e60e2dd20af](https://toolshed.g2.bx.psu.edu/view/devteam/sam_to_bam/0e60e2dd20af)<br/>samtools_calmd [26b4f9f98aca](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_calmd/26b4f9f98aca)<br/>samtools_fastx [b906586a6596](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_fastx/b906586a6596)<br/>samtools_fixmate [d2df79922531](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_fixmate/d2df79922531)<br/>samtools_markdup [40fa6c240105](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_markdup/40fa6c240105)<br/>samtools_merge [cae2794d2deb](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_merge/cae2794d2deb)<br/>samtools_reheader [85e38b31e8b3](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_reheader/85e38b31e8b3)<br/>samtools_slice_bam [b8beef827165](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_slice_bam/b8beef827165)<br/>samtools_sort [d54a4df48867](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_sort/d54a4df48867)<br/>samtools_split [818030fa6bbf](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_split/818030fa6bbf)<br/>samtools_stats [541082d03bef](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_stats/541082d03bef) |