From b4c1e8a7914475860dd03060cafb00ea0c9fd62c Mon Sep 17 00:00:00 2001
From: cat-bro <cathjb@gmail.com>
Date: Thu, 13 Jun 2024 10:43:26 +1000
Subject: [PATCH] fgenesh toolbox filter

---
 .../galaxy/toolbox/filters/ga_filters.py.j2   | 41 ++++++-------------
 1 file changed, 13 insertions(+), 28 deletions(-)

diff --git a/templates/galaxy/toolbox/filters/ga_filters.py.j2 b/templates/galaxy/toolbox/filters/ga_filters.py.j2
index 2352f0ddc..69736ac68 100644
--- a/templates/galaxy/toolbox/filters/ga_filters.py.j2
+++ b/templates/galaxy/toolbox/filters/ga_filters.py.j2
@@ -6,34 +6,6 @@ test_tools = [
         'id': 'maxquant_test',
         'role': 'maxquant_test',
     },
-    {
-        'id': 'fgenesh',
-        'role': 'Fgenesh',
-    },
-    {
-        'id': 'fgenesh_annotate',
-        'role': 'Fgenesh',
-    },
-    {
-        'id': 'fgenesh_get_mrnas_gc',
-        'role': 'Fgenesh',
-    },
-    {
-        'id': 'fgenesh_merge',
-        'role': 'Fgenesh',
-    },
-    {
-        'id': 'fgenesh_split',
-        'role': 'Fgenesh',
-    },
-    {
-        'id': 'fgenesh_to_genbank',
-        'role': 'Fgenesh',
-    },
-    {
-        'id': 'fgenesh_get_proteins',
-        'role': 'Fgenesh',
-    },
     {
         'id': 'cellranger',
         'role': 'cellranger',
@@ -56,6 +28,19 @@ def hide_test_tools(context, tool):
         return user is not None and user.email in test_tool_users
     return True
 
+def hide_fgenesh(context, tool):
+    """
+    make fgenesh* visible to members of Fgenesh group
+    """
+    if tool.id.startswith('fgenesh'):
+        user = context.trans.user
+        return user is not None and (
+            user.email in test_tool_users or 'Fgenesh' in [
+                r.name for r in user.all_roles() if not r.deleted
+            ]
+        )
+    return True
+
 def restrict_alphafold(context, tool):
     """
     Only let GA team, alphafold beta users and UoM vet school alphafold users see alphafold